Plasmodium chabaudi: PCHAS_1451700
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Entry
PCHAS_1451700 CDS
T01108
Name
(RefSeq) splicing factor 3B subunit 3, putative
KO
K12830
splicing factor 3B subunit 3
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_1451700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcb03021
]
PCHAS_1451700
03041 Spliceosome [BR:
pcb03041
]
PCHAS_1451700
03036 Chromosome and associated proteins [BR:
pcb03036
]
PCHAS_1451700
Transcription machinery [BR:
pcb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
PCHAS_1451700
Spliceosome [BR:
pcb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
PCHAS_1451700
Complex B
PCHAS_1451700
Complex C
U2 SnRNP specific factors
PCHAS_1451700
Chromosome and associated proteins [BR:
pcb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
PCHAS_1451700
TFTC complex
PCHAS_1451700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
3499356
NCBI-ProteinID:
XP_016655032
UniProt:
A0A4V0KDH8
LinkDB
All DBs
Position
14:1906645..1910877
Genome browser
AA seq
1233 aa
AA seq
DB search
MPILYHLTLQKPTAITRTVYGNFSGPKAHEIIVAKGQVLELLRADKQGKLSVIVSKDIFG
IIRSLEIFRLTGSNKDYIAIGSDSGRLVILKYDDEKNDFIRVHCETYGKSGIRRIVPGEY
IAVDPKGRALMLCAIEKQKFVYILNRDNKENLTISSPLEAHKSHSICHAVVGLNVGFENP
MFVSIEQNYETLDKEVTNGNIQLSSNPNEDQQIMEYPKKGLCFWEMDLGLNHVIKKHTIP
IDITAHLLIPLPGGQQGPSGLIVCCENYLVYKKIDHDDVYCSYPRRLEVGEEKNISIVCW
TIHRIKTFFFILIQSEYGDLYKIEVNHEDGIVKEIICKYFDTVPIANSICVLKSGALFVA
AEFGNHFFYQFSGIGNDSNESMCTSNHPSGKNAIIAFKTQKLKNLYLVDQIYSLSPIIDM
KILDAKNSSLPQIYALCGRGPRSSLRILQHGLSIEELANNELPGKPKYIWTIKKDNSSEY
DGYIIVSFEGNTLILEIGETVEEVYDSLLLTNVTTIHINLLYDNSFIQVYDTGIRHINGK
IVQEWVPPKNKQINAATSNGSQIVVSLSGGELIYFEIDESHTLTEIFRKNINVEILCLSI
QQIQQNKLRASFLAVGCLDNVVRLLSIEKDQYFKQLSTYILPNNSSPQDICISEMKELGN
QKEHTILYLNIGLNTGVLLRSVIDPICGTLSNHYSKYLGAKSVKICHVQVNKNPALLVLS
EKTYLCYVYQGKYIYSPLNYDVLEYASSFYSEQCSDGYVAISGNSLRIFRFYRLGEVFSQ
NILPLTFTPRKIVPLPFPSLFYDNDTSLEITRIKNIQMLAVIEADHNAYDENTQREIQKA
LRDIKLEGKEGEEDDVPQDEPDNEEEELLYDRIGTPKAGAGKWGSCIKIINPINLQVIDK
VSLELEEAALSVCACELEALHCLIVGTTTNMTLKNRNVPSASLRVYTYDINYKLNLLHIT
PIEDQPYCFCPFNGRVIVSVGNKLRIYALGKKKLLKKCEYKDIPEAIVSIKVSGDRIFAS
DIRESVLIFFYDSNQNVIRLISDDIIPRWITCSEILDHHTIMAADKFDSVFILRVPEEAK
QEEYGIANKCWYGGEVISSSTKNRKMEHIMSFHIGEIVTSLQKVKLSPASSECIIYSTIM
GTIGAFIPYDNKEELELTQHLEIILRTEKHALCGREHIFFRSYYHPVQHVIDGDLCEQFS
SLPFDVQRKVASDLEKTPDEILRKLEDIRNKIL
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgcctatactatatcatctaactttgcaaaaacccacagcaatcaccagaacagtgtat
ggaaacttttctgggcccaaggcacacgaaataatagttgcaaaaggtcaagtattagaa
ttattgagagctgataaacaagggaaattaagtgttatcgtatctaaagatatattcggt
ataattcgaagcttagaaattttccgattaactggtagtaataaagattatatagcaatt
ggtagtgactcaggaagattagtaatattaaaatatgatgatgaaaaaaatgattttatt
cgagttcattgtgaaacatacggtaaaagtggtattagacgaatcgtacctggtgaatat
attgctgtagatccaaaaggtagagctttaatgttatgtgctatcgaaaaacaaaaattt
gtatatatattaaatagagataataaagaaaatttaactattagtagtcctttagaagct
cataagtctcattctatttgtcatgctgtagttggattgaatgtcgggtttgaaaatcca
atgtttgtatcgatcgaacaaaattatgaaactttagataaagaagttacaaatggaaat
atacaattaagttcgaatccaaatgaagatcaacaaataatggaatatcctaaaaaagga
ttatgtttttgggaaatggatctcggattaaatcatgtaattaaaaaacatacaatacct
attgatattactgcacatttattaatacctttaccaggaggtcaacaaggacccagtggt
ttaattgtctgttgtgaaaattatttagtttataaaaaaatagatcatgacgatgtatat
tgttcatatccaagacgattagaagtgggggaagaaaaaaatatatctattgtttgttgg
acaatacatagaatcaaaacattcttctttatattaatacaatctgaatatggagattta
tacaaaatagaagttaatcatgaagatggtattgtaaaagaaattatttgtaaatatttt
gatacagtacctatagctaactctatatgtgtattaaaatctggagcattatttgtagca
gcagaatttgggaatcatttcttttatcaattctctggtattggcaatgattccaatgaa
tctatgtgtacatctaaccatccatcaggaaaaaatgcaattatcgcatttaaaacacaa
aaattaaaaaatttatatttagtagatcaaatatattctttatccccaattattgatatg
aaaatattagatgcaaaaaattcaagtctcccacaaatatatgctttatgtggtagagga
ccaagatcctctttacgaatattacaacatggcttaagtatcgaagagctagcaaataat
gaattaccagggaagcctaaatatatttggacaattaaaaaagataactcaagtgaatat
gatggatatattattgtaagctttgaaggaaatacattaatattagaaattggtgaaaca
gtagaagaagtatatgatagtttacttttaacaaatgtaacaactatacatattaattta
ttatatgataattcttttatacaagtatatgatacaggcatacgacatatcaatggtaag
atagtacaagaatgggtaccaccaaaaaataaacaaattaatgccgctacttctaatggt
tcacaaattgtagtatcccttagtggtggtgaattaatttattttgaaattgatgaatca
catactttaactgaaatatttagaaaaaatattaacgtagaaattttatgtttatcaata
caacaaatacaacaaaataaattaagagctagctttttagcagttggatgtcttgataat
gtagtacgtttactatcaattgaaaaagatcaatattttaaacaactatctacatatatc
ttacctaataattcatcacctcaagatatttgtatatctgaaatgaaagaattgggtaat
caaaaagaacatactattttatatttaaatatcggattaaatacaggagtacttttaaga
agtgttatagatcctatatgtggtacattgagtaatcattattcgaaatatttaggggct
aagtctgttaaaatatgtcatgtacaagttaataaaaatccagctcttttagtattatct
gaaaaaacatatctatgttatgtatatcaagggaaatatatttattccccattaaattat
gatgtactagaatatgcatcatctttttattctgaacaatgctcagatggttatgtagct
atatctggaaatagtttaagaattttccggttttatagacttggcgaagtttttagtcaa
aatattttacccttaacatttacaccaagaaaaattgtcccattaccatttccttcatta
ttttatgataatgatacttctctagaaattacgcgaattaaaaatatacaaatgctggct
gttatagaagcagaccataatgcatatgatgaaaatacccaacgagaaattcaaaaggca
ttacgtgatattaagctcgaagggaaagaaggggaagaagatgatgtaccacaagatgaa
ccagataatgaggaagaagaattattatatgatcgtataggaactccaaaagcaggtgca
ggtaaatggggatcctgtattaaaattattaacccaataaacttacaagttatagataaa
gtgtcattagaactcgaagaagcagctttaagtgtttgtgcttgtgaacttgaagcatta
cattgtttaatagtcggaaccactactaatatgacattaaaaaatagaaatgtcccatca
gcatctttaagagtatatacatatgatattaattacaaacttaatttgttgcatattaca
cctattgaagatcaaccatattgcttttgtccatttaatggcagagttatagtatcggtt
ggaaataaattaagaatatatgcattaggaaaaaaaaaattattaaaaaaatgtgaatat
aaagatattcctgaagcaattgtttcaataaaagtttctggagacagaatttttgcatct
gatatcagagaatctgttctcatatttttttatgattcgaatcaaaatgttatacgactt
atatcggatgatattatacctcgatggataacatgttcggaaattttggatcaccatact
attatggctgcggacaagtttgattccgttttcatactgagggtacccgaagaagcgaaa
caagaggagtacggaatagctaacaaatgctggtatggaggagaagtaataagtagttca
acaaaaaatagaaagatggagcacatcatgagctttcatattggagaaatcgtgacctcc
ttacaaaaagtcaagctatcccctgcgagcagtgaatgcataatatattccaccatcatg
ggaaccataggagcatttattccgtatgataacaaggaagagctggaactgactcaacat
ttggaaataattttgagaacagaaaagcatgctctttgtggacgagagcacatatttttt
cgttcttattatcaccccgttcagcatgttattgatggcgatttatgcgaacaattttcg
agcctaccatttgacgttcaaagaaaagttgcatccgacttagaaaaaacaccagacgaa
attttaagaaaattagaagacataagaaataaaatactttaa
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