Plasmodium chabaudi: PCHAS_1452800
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Entry
PCHAS_1452800 CDS
T01108
Name
(RefSeq) pre-mRNA-splicing factor SYF1, putative
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_1452800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcb03019
]
PCHAS_1452800
03041 Spliceosome [BR:
pcb03041
]
PCHAS_1452800
Messenger RNA biogenesis [BR:
pcb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PCHAS_1452800
Spliceosome [BR:
pcb03041
]
Complex B
Other components
Prp19-related factors
PCHAS_1452800
Complex C
PCHAS_1452800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
TPR_2
Mad3_BUB1_I
ANAPC3
Motif
Other DBs
NCBI-GeneID:
3487247
NCBI-ProteinID:
XP_016655038
UniProt:
A0A4V0KDE4
LinkDB
All DBs
Position
14:complement(1949730..1953023)
Genome browser
AA seq
919 aa
AA seq
DB search
MNELGNVYDCDLLFNDDDRTLEGDGNNCEDTVAWANEENESYLKNIDFDIKNNMDKISTQ
YLFLYINTYKEKNIKNTKKLYNLKFYDIHLRKDEYPLLETEHNIVEYCINELINKENEKN
EFDSLQKNDNNSNDTDEEHKYYLLKIYETILKHFPYSFKIWYHYIKDSIEMISDIYYNNK
KEYEKINNIFENCLLYLYNFKSIYIMYIQFLYIQRNVKKIREVFNKSLQNICLNQHEDIW
NYQLKFISKIDSKLINYEYIKRYVTIYPEQVIFLFNHYIKYKMHKQALSTFFYILNNDDI
NFDLGDKTKYDLYKEIFNLINSSKMLNNDVMEILRKNLDIFKNYENITSIYILLANNFVY
EGRWNKAMDIYEEGISESYSINDFSVLFDNYIETLKVLIDLKIRGQDGNAIKLANKTDQD
EETDESESENEMDISDDSIIDLYMDKINYLLDKRKIYIADIKLKNNKNNVYAWLSKIDVI
DNENEKINLFNQCLKFFKDNDYTGKLSDVYITYAYYYYNNNNYKESVNVFHKAIEDTNIK
SLNEMANIFCSWIELEILEKNYNEALQIARLSIDFNKTNNFDKKGLQIVSYNSDRTSIRK
DNSTYGFQNVQNKFNLKNSIKLVCLVLDMEINYGTVETALCMFDLLYHSKSITIKMVLSF
ANYLYEQKYFNECFKVYEKAISIFHYPYLYPIYVNYINKYIERYKDKNISYVRELFKQAI
YGTDNKTYVPKEFSKYIFLMYISFEENYGFLKKSLSIYKEAIPFLEEQDKIKFYKIFISK
ISKSYGIHKAREAFEEAIQTLTDDQAREICLLYIDMEYKLNEYDRVRALYVYTAQFTNPL
KFPKFFQDWREFEALYGNEHTFRDMIRIKRSVRSMFTNSNSASFKDKHEETEEGKIEDTK
RKLMEIIENETAENKKLKI
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattaggaaatgtatatgattgtgatttgctttttaatgatgatgatagaact
ttggagggagatggaaataattgtgaagatacagtagcatgggctaatgaggaaaatgaa
agctacttgaaaaatatcgactttgatataaaaaataatatggacaaaatatcaacacaa
tacttatttttatatataaacacatataaagaaaagaatataaaaaatacaaaaaaatta
tataatttaaaattttatgatatacatttgagaaaagatgaataccctctgttggaaacg
gaacataatattgtagagtattgtattaatgaattgataaataaagaaaatgaaaaaaac
gaatttgatagtttacaaaagaatgataacaatagtaatgacacggatgaagaacataaa
tattatttactaaaaatttatgaaacaattttaaaacattttccttacagctttaaaata
tggtatcattatataaaggatagtattgaaatgattagtgatatatattataataataaa
aaagaatatgaaaaaataaataatatttttgaaaattgtcttttatatttatataatttt
aaaagtatatatattatgtatatacaatttttatatattcaaagaaatgtaaaaaaaata
agagaagtttttaataagtctttacaaaatatatgtctaaatcaacatgaagatatatgg
aattatcaattaaaatttatatcaaaaatagatagtaaattaattaattatgaatatata
aaaagatatgtcacaatttatcctgaacaagtcatatttttatttaatcattatattaaa
tataaaatgcataaacaagctttaagcacatttttttatatattaaataatgatgatata
aattttgatttaggagataaaaccaaatatgatttatataaagaaatatttaatttaatt
aattcatcaaaaatgttaaataatgatgttatggaaattttaagaaaaaatctggatatt
tttaaaaattatgaaaatattacttcaatatatattttgttggctaataattttgtctat
gaaggaagatggaataaggctatggatatttatgaagagggaatatctgaatcatattct
attaatgatttctctgtgctttttgataattatatagaaaccttaaaggtattgatagat
ctcaaaatacgaggtcaggatggaaatgccatcaagctagccaataaaactgatcaagat
gaagaaacagatgaaagtgaaagtgaaaatgaaatggatatttccgatgattctattatt
gatttatatatggataaaataaattatttgttagacaaaagaaaaatatatattgcagat
ataaaacttaaaaataataaaaataatgtatatgcatggttaagtaaaattgatgttata
gataatgaaaatgaaaaaatcaatttatttaatcaatgtttaaaattttttaaggacaat
gattatactggaaaattaagtgatgtatatattacttatgcttattattattataacaat
aataattacaaagaatcagtaaatgtttttcataaagctatagaagatacaaatataaaa
agcttaaatgaaatggcaaatatattttgttcatggattgaattagaaattttagaaaaa
aattataatgaagcattacaaattgctagattatctattgattttaataaaactaataat
tttgataaaaagggattacaaatagttagttacaattctgataggacatccattaggaag
gataattccacttatggtttccaaaatgtgcaaaataaatttaatttaaaaaattctata
aaattagtatgtttagtattagatatggaaataaattatggaactgttgaaacagcttta
tgtatgtttgatttattatatcattctaaaagtattactattaaaatggttttgtcattt
gctaattatttatatgaacaaaaatattttaatgaatgctttaaagtatatgaaaaggct
atttctattttccattatccatatttatacccaatttatgttaattatattaataaatat
attgaaaggtataaagataaaaatatttcgtatgtacgcgaattatttaaacaagccata
tatggaactgataataaaacatatgtccctaaagaattttcaaagtacatttttttaatg
tacatttcgtttgaagaaaattatggatttctgaaaaaatcactaagtatttacaaagag
gctattccgtttttggaggagcaggataaaattaaattttacaaaatatttatttcgaag
atatccaaatcgtatggaattcacaaagctagagaagcatttgaagaagctattcaaacg
ctaacagatgatcaagctagagaaatttgtttgttgtatattgatatggaatacaagtta
aatgaatatgatcgagtaagagccctttatgtatatactgctcagtttacaaatccattg
aaattccccaaatttttccaggattggagagaatttgaggcattgtatggaaatgaacac
acatttagagatatgataagaattaaaagaagtgtccgtagtatgtttacaaattcaaat
agtgcttcatttaaggataagcatgaagaaaccgaagaaggaaaaatagaagatacgaaa
agaaaattaatggaaattattgaaaatgaaactgctgaaaataaaaaattaaaaatataa
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