Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_001450
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Entry
PCC21_001450 CDS
T02320
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PCC21_001450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcc03400
]
PCC21_001450
Enzymes [BR:
pcc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PCC21_001450
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PCC21_001450
DNA repair and recombination proteins [BR:
pcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PCC21_001450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AFR01548
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All DBs
Position
155952..156761
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AA seq
269 aa
AA seq
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MPELPEVETSRRGISPYLVDHTILYAEVRNSRLRWPVSAEILSLSDEPVLSVRRRAKYLL
IELTRGWIIVHLGMSGSLRVLPEYSEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDNP
ETCSVLAHLGPEPLEAEFSADYLYQISRGKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRAAGSLNENDAAVLVGVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRN
GEPCRTCGTLIETAKHGQRSTFFCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagtcgtcggggaatttcaccgtatcttgtcgat
cacaccatcctttatgctgaagtgaggaactcgcgcctgcgctggccggtatcggctgag
attctctctctgagcgatgaaccggtgctcagtgtgcgtcggcgggcaaaatatctgctg
attgagctgactcgcggctggattattgtgcatctcggcatgtctggcagcctgcgggtg
ttgccggaatatagtgagccggagaaacacgatcatgttgatttggtgatggacagcggt
aaggtgctgcgttacaccgatccccggcgttttggtgcctggctgtggacggataatcca
gaaacttgttctgtattggcgcacttgggccctgagccgttagaggcggaattctctgcc
gattatctttatcagatttcacgcggtaaaaagacggcaatcaaacaatggattatggat
aacaaagtcgtcgttggcgtaggcaatatttacgcgagcgaatcgctgtttgctgcgggt
atccatcctgacagagctgctggatcgctaaatgaaaatgacgcagccgtattggtgggc
gtgattaaacaggtgctacagctttcgattgagcaggggggcacaacactgcgtgacttt
ttgcaatcagacggcaaacccggttattttgcgcaggagctgcgagtctatggccgcaac
ggtgaaccttgtcggacatgcggaacattgatcgaaaccgcgaagcatgggcagcgcagc
acgtttttctgtcgtcgctgccagaagtaa
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