KEGG   Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_002120
Entry
PCC21_002120      CDS       T02320                                 
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pcc  Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PCC21_002120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcc03021]
    PCC21_002120
   03400 DNA repair and recombination proteins [BR:pcc03400]
    PCC21_002120
Enzymes [BR:pcc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PCC21_002120
Transcription machinery [BR:pcc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PCC21_002120
DNA repair and recombination proteins [BR:pcc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PCC21_002120
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AFR01615
LinkDB
Position
237283..241506
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGDVTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDAVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVVNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAAMAKGDGAEVSGGETVANW
DPHTMPVITEVSGNIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDDKGEDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNAGSTEFLEGEQAEVSRIKIANRQLEADGKITATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
VPQVSADEASANLAELLNAGFGSSDDE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccattaactaccgtacgttcaaacctgaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattatgagtgcttgtgcggtaagtataagcgcctgaaacac
cgcggtgttatttgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgtatgggccacatcgagctggcttctccgactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgctggatatgccgctgcgtgatatcgaacgcgtactttat
tttgaatcttatgtcgtggttgaaggcggcatgaccaacctcgaacgccgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgaattcgacgcgaaaatg
ggcgccgaagcgatccaggctctgctgaagaatatggatctggagcaggaatgcgagcag
ctgcgtgaagagctgaccgaaaccaactccgaaaccaaacgtaagaagctgacgaagcgt
attaagctgctggaagcgttcgtacagtctggtaacaagccagagtggatgatcctgacc
gttctgccggtactgccgccagatctgcgtccgttggttccgctggatggtggtcgtttt
gcgacttccgacctgaatgatctgtaccgtcgcgtgatcaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgccctgctggataacggccgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggctgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttccgttatcaccgttggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgccaagaaaatg
gttgagcgtgaagaagccgtcgtatgggatatcctggacgaagtcatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgaaccggtc
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgacggtgaccagatggctgtacacgtaccgttgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtctcctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtactcacgggtccgaaagaagctgaacgcgtttatcgtgccggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcacggaagagatcaagagcatcgaa
ggcgatgttacgcatcagacgtcgattattgatacgactatcggtcgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggtctgaaaccgacagttatcttc
gctgaccagactatgtacaccggttttgcttacgcggcgcgctctggcgcttccgtaggt
atcgatgacatggttatcccggagaaaaaagccgagattatcgaagaagcagaaaccgaa
gttgccgagattcaggagcagttccagtccggtctggttactgcgggcgaacgctataac
aaagtgatcgatatctgggctgcagcgaacgaacgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgtggttgagcagcaggtttctttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaaaccagatggttcgatcatcgagacaccaattacc
gcaaacttccgtgaaggtttgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttatctgactcgtcgtctg
gttgacgttgcgcaggatctggttgtgaccgaagacgattgtggtacccacgaaggtatc
atgatgacgccggttatcgagggtggtgatgttaaagagccactacgtgagcgcgtactg
ggtcgtgtaacggctgaagacgtgatcaaaccgggcacggcggacattctggttccacgt
aacacgctgctgaatgagcagtggtgtgacatgttggaagagaactccgttgacgccgtt
aaagtacgttcagtcgtaagctgcgaaaccgactttggcgtgtgcgccaactgctacggt
cgcgacctggctcgtggtcacatcatcaacaaaggtgaggccatcggggttatcgcggca
cagtccatcggtgaaccgggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcagctgagtccagcattcaggtgaaaaacaaaggtagcctgaagctg
agcaacgcgaagttcgtcgtgaacagcaacggtaaactggttattacttcacgtaatacc
gaactgaaactgatcgacgaattcggacgtacgaaagaaagctataaagtgccttacggt
gcggcaatggcgaaaggcgatggtgcagaagttagcggtggcgaaactgtcgctaactgg
gacccgcataccatgccagttatcaccgaagtgagcggtaacattcgcttcaccgatatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggtttgtcctctatcgtg
gttctggatagtgcagagcgtactggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgacaaaggcgaagatgttctgattccaggtacggatatgcctgctcagtacttc
ctgccgggcaaagcgatcgtgcagttggaagacggcgtgaaaatcagcagcggtgatact
ttggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gtagccgacctgttcgaagcccgtcgtccgaaagagccggctattctggcagagatcagc
ggtatcatttccttcggtaaagaaaccaaaggtaaacgccgtctggtgatttctccgttg
gatggcagcgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaagtggtagaacgtggtgacgttgtttccgacggcccagagtctccgcacgatatc
ctgcgtctgcgtggcgtacatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttaacgcaggtagcaccgagttcctggaaggcgaacaggca
gaagtgtctcgcatcaagattgccaaccgtcagttggaagcggatggcaagattacggca
acgttcagccgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccactcgcgtactgaccgaagccgctgttgcgggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatcccagcgggt
acgggttatgcgtaccatcaggatcgtatgcgccgccgtcaggcgggtgaagcacctgtc
gtgcctcaggtgagtgccgatgaagcttctgctaacctggccgaactgctgaacgcaggc
tttggtagcagcgacgacgaataa

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