Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_004980
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Entry
PCC21_004980 CDS
T02320
Name
(GenBank) putative linear pentadecapeptide gramicidin synthetase LgrB
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Condensation
AMP-binding
PP-binding
TubC_N
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
AFR01901
LinkDB
All DBs
Position
555182..561535
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AA seq
2117 aa
AA seq
DB search
MKDIVTLLKQLERQGVRLALNAQGQLISQSNKDAITADIGRTIKENKDAIVRCLTAQQAF
ERPITPQNATSGPLSSSQSGLWFIEQYEEQSHLYNMPVYFRLTGTLDVPALEFAFDALAQ
RHASLRTRFVVNEQGKGEQRIDAYQPFVIQHDDFSLLPEAEREARLQQQVKAEISRPFDL
TAGDLTRVRLVKMSDRVHVLMITQHHIISDGWSVKNLFADFKPAFLACQNRQPHPVEPTQ
LNYIDYAHWFNSASFLDYHNEFKPFWVERLTGIPEVHSLPLDKPRPAHQNSGGEVIFSAI
NNDLWDKFKRLCQRYNTSNFIGLHAVFSLMLARISGEKDIVIGSPLAYRERPDIEDVVGF
FVNTIVLRTQLQDQQSFVDYLQYCREQDLSAFDHQLYRFEALSEAIGSDRTTAINPIFQV
MLVYQAKVDFNDLIPGCDAAEETSPVLPAKTDISVKVTELMGEVRLDWLFATALFERQTI
QYYADRFIRLIEAVVEAPETDVWHLPLMEAERFAAVLAESQQLPRSYPQPQLTVTDVIEA
IAQRDPQQLAIAFDGEQRTDTLTYGELNRQSNQLAHWLHRQGLGEQSLVGVLAKRDRYFV
IALLAVWKAGAAYVPLDPDYPPERLRHIITDANLAVILGGDGQQLAQWSAEQCIDLTDPT
VVAQWHDLPGDEPPAIPRHAQQLAQVIYTSGSTGLPKGVMIEHGSLINLLDDHRDRIDFT
PQSTMFNCMSLSFDAGNMTTLLPLSSGGTLAFGEPNDRAIVQAEQAGATHLILPTALMSI
LDPQHVNGIQAIGMGGEACPNAVVENWADKVALYNMYGPTECTVTALSTRLRKGQPVTIG
KPIAHIQALILDAAGQLCPAGVPGELCLAGLGLARGYLNQPQMTASRFEHITLNDVNNTE
QSTATLRIYRTGDKARLLNNGDYEYCGRIDEQIKLRGYRIEPGEIEAQLAAVCPSLKQVK
VIVAQVGNRPALVAYGTVKLGSISPEPAAVLIDVAKHLPEYMVPFRLILLEDMPLTPNGK
LDTKQLPPVLEASEGDGEADNPLEADVLAIWRSVLNTPLGVEDDFFRLGGDSILSIQLTT
RLRSAGYVCTVKDVFEAKSVRRLCRVLAQNDRDTGVVAEQGTLEGEFALLPIQRWFMEQP
LARPEHWNQAAMIQLPDVDTERLTTMLQALMAQHDALRLACDADGQRYLTDVPCPAVLTL
DYRQLGDDGLQQAFTALQSEFDPAQGRTMAAALVRHHPQADTAVFLAFHHLVIDAVSWRI
LIDDLERLYLGEPLLPKTSSYRQWGAALQNYATQHAEQLTYWQAQEDGVDQTALMAAKDR
QGQASAAMLTLDAETTGQLVSEANRAFNTDVSDLLLAALTRTLNDLGWGDKARIMLEGHG
REAIDPTLDVSRTVGWFTSTYPVCLQDRSDWASLIKSSKEQLRQVPDKGAGFNPLRYHHP
EGGSLTLSPIVFNYLGLSVQAAGVWRPVDVAPGGCVSPENKPAEIISLHGGIAGGQLTLR
QVGCLNQRDSERLMAQFTENLRALTEACLAQLRYGTVFTPSDFPAVMLSQTQLDSLSQRY
DIDTLLPLSSLQQSMLYHRLRCPQDDAYHLQTPIRYAQALDVEGYRQAWQRQIQRFPALR
AALESECASVQVIVTQADLPFYYQDVAQEADPLAVIERYRQQDLRTGFNLSQPPLLRIAC
FRLGEQDYRVLLSCHHSVIDGWSGPQLLGAVHRDYQMLMNGETFMHGETSAIQVDRAYVD
YALHAVAQQSAVEAFWQQRQPLLAQTNDVAMLFAASGKRADLSQHLTQVEPQVTGVSLNE
QDQAALIAFAREVGVTHSIIAQYAWHRLLARSTGDAVSIVGNVLSGRESPVEDVASSVGL
YINSLPLALSWQQPVSLQQHLVQLQNELMAMNQHATQSLIALTAGRSRLFNSLFIYENYP
VNENRPGAKAEQGQRADDPHRLSPEFSAAYEKVEMPLNLVVREQAGCMLLRFEFDADVLD
SAQARRVLMRWHDEVVALINSAPQQPAEIIGHEKATGSVVAQKTVADSGLSQPDTPSAQS
LLRVWAQTLHLNESGLWSQTLCESGVDSLQRIALAQALSRALAQLVSVALLQRYPSPQAL
SGYLAQSRVTANEETLS
NT seq
6354 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatatcgtaacgctgttaaagcagctagaacggcagggcgttcgtctggcgttg
aatgcacagggacagctgatttcgcagtctaacaaagacgcgatcacggcagacattggg
cgcacgattaaggaaaacaaagacgccattgtgcgctgcctgacagcgcagcaggcgttt
gagcgccccatcacgccgcagaatgctacgtctggcccgctgtcgtcatcgcaaagcgga
ctgtggtttatcgaacagtacgaagagcagtcacacctctacaatatgccggtctatttt
cgcctgaccggcacgctggatgtgcccgctctggagtttgcctttgatgcgctggcgcag
cgtcatgccagcctgcgcacccgctttgtggtgaatgaacagggtaagggtgaacagcgt
atcgatgcctatcaaccgtttgtgatacagcatgatgacttctcactgctgccggaagcc
gagcgggaagcgcgcttgcagcagcaggtgaaagcagaaatcagccgcccgttcgatctc
acggcgggcgatctcacccgcgtgcggctggtgaagatgagcgatcgagtgcacgttctg
atgatcacccagcaccatattatttccgatggctggtcggtgaagaatctatttgcggac
ttcaaaccggcctttttggcctgtcaaaaccgccagcctcatcccgtcgaaccgacccag
cttaactatatcgattacgcacactggttcaattccgcctcgtttctggattaccacaac
gaattcaaaccgttctgggttgagcggctgacggggattcccgaagtgcacagcttgccg
ctggataaaccacgtccggcgcaccagaacagcggcggtgaggtgatcttctccgcgatt
aacaacgatctgtgggataaattcaaacgtctgtgccagcgctacaatacgtctaacttc
attggcctgcatgcggtgttttccctgatgctggcgcggattagcggcgagaaagacatt
gtcattggttcgccgctggcctaccgcgaacggccggatatcgaagatgtcgtcggcttc
ttcgttaacaccatcgtgctgcgcacccagttgcaggatcaacagagctttgtcgattac
ctgcaatactgccgcgagcaggatctgtcggcattcgatcatcaactctatcgttttgaa
gcgctgagcgaggcgatcggttccgatcgcaccaccgcgatcaacccgatctttcaggtg
atgctggtgtatcaggccaaagtggatttcaacgatctgatccccggctgtgatgcggcg
gaggaaacgtcgccggtgctgcctgccaagaccgatatttcagtcaaggtgacggagctg
atgggggaggtgcggttggactggctctttgccaccgcactgtttgagcgtcagacgatc
cagtattacgccgaccgctttatccggctgattgaggccgtggttgaggcaccggaaacc
gacgtctggcatctgccgctgatggaagcggagcgctttgccgccgtgctggcggagagt
cagcagctaccgcgtagctatccgcagccgcagctgacggtaaccgacgtgattgaagcc
atcgcccagcgcgatccccagcagctggcgatagcttttgacggcgaacagcgcaccgat
acgctgacgtatggagaactgaacaggcagtcaaatcagcttgcgcactggctgcaccgt
caggggctgggtgaacagtcgctggttggcgtgctggcgaagcgcgatcgctattttgtc
attgcgctgctggccgtctggaaagcgggtgcagcctacgtgccgctggatcctgactat
ccaccggagcggctgcgtcacatcattaccgatgccaatcttgccgtcattctcggcggc
gatgggcaacagctggcgcagtggtctgccgaacagtgcatcgatctgaccgatcctacg
gttgtcgcgcagtggcacgatctgccgggcgatgaaccgccagccattccgcgccatgca
cagcagctggcacaggtgatctacacctcgggatcgaccggtctgccgaagggcgtcatg
atcgaacacggttcactgatcaatctgctggacgatcatcgcgatcgtatcgatttcaca
ccgcaaagcaccatgttcaactgcatgtcgctctcttttgacgccggtaacatgacgacg
ctgttgccgctgagcagcgggggcacgctggcgtttggcgaacccaacgatcgggcgatt
gtgcaggccgaacaggcgggtgcgacgcacctgatcctgccgacggcgctgatgtcgatt
ctcgatccacagcacgttaacggcattcaggccattggcatgggcggtgaagcctgcccg
aacgccgtggtggaaaactgggccgataaggtcgcgctgtacaatatgtacggaccgacg
gagtgtaccgtcaccgcgttgagcacccgtctgcgtaaaggtcagcctgtgaccatcggg
aaacctatcgcccatattcaggcgttgattctggacgcagcagggcaactgtgtccggcg
ggcgtgccgggtgaactgtgtcttgcggggcttgggctggcgcgcggttacctcaaccag
ccgcagatgactgccagccgctttgaacacatcacgctgaatgacgtgaataacaccgaa
cagagcacggcgacgctgcgtatctatcgcacgggtgataaggccagactgctgaacaac
ggcgactatgaatattgtggccgtattgatgagcagattaagctgcgcggctaccgcatt
gagccgggtgaaattgaggcacagctggcggcggtatgtccgtcgctgaagcaggtgaag
gtcattgtggcacaggtcggaaaccgtccggcgctggttgcctatggcacggtgaaatta
ggcagtatcagcccagaacctgccgccgtgctgattgatgtcgcgaagcacctgccggaa
tacatggtgccgttccgactgattctgctcgaagacatgccgctgacgccaaacggcaag
ctggatacgaaacagctgccgccggtgctggaggcaagtgaaggcgacggtgaagccgat
aatccgctggaagcggacgtactggcgatttggcgcagcgtgctgaatacgccgctgggc
gttgaggatgatttcttccgcttaggcggcgattccatccttagtattcaactgacgacg
cgcttgcgcagtgcgggctatgtctgcacggtaaaagacgttttcgaagcaaaaagcgtg
cggcgtttgtgtcgcgtgctggcacagaatgatcgtgacacaggtgttgtggcggagcag
ggcacgctggaaggcgaattcgcgctgctgccgattcagcgctggtttatggaacagccg
ctggcacgtcctgagcactggaatcaggcggcgatgatccaactgccggacgtggatacc
gaacgccttaccacgatgttgcaggctctgatggcacagcatgacgcgctacgtctggcc
tgtgatgccgacgggcaacgctatctgacggatgtgccttgccctgcggtgttgacgctg
gattatcgtcagctcggtgacgacggcctgcaacaggcgtttaccgcattgcagagtgaa
ttcgatcccgcgcagggaagaacgatggccgccgcactggtacgccatcatccgcaggcg
gacacggcagtgttcctcgctttccaccatctggtgattgatgccgtgtcctggcgcatt
ctgatcgacgatctggagcggctgtacctcggtgaaccgctgctgccgaaaacgtcgagc
tatcgccagtggggggcggcactgcaaaactacgccacacagcatgcggaacagctgacg
tactggcaggcgcaggaagacggcgtggatcagacggcactgatggcagcgaaagatcgg
cagggccaggccagcgccgcgatgctgacgctggatgcggaaaccacaggtcaactggtg
agcgaggccaaccgtgcctttaataccgacgtcagcgatctgctgctggcggcgctgaca
cgtacgctaaacgatctcggctggggcgataaagcccgcatcatgctggaagggcacggt
cgtgaagcgattgatccgacgctggatgtcagccgcacggtagggtggtttaccagcacc
tatccggtgtgtctgcaagatcgctccgactgggcttctcttattaaatccagcaaggaa
cagctgcgtcaggtgccggataaaggcgccgggtttaacccgctgcgctaccatcacccg
gagggcggttcgctgacgctatcgccgattgtgttcaactatctcgggctgtcggttcag
gcggctggcgtgtggcgtccggtggatgtcgcgccgggaggctgcgtctcgccggagaat
aaaccggcggagattatcagccttcacggcggaattgcgggcggacagctgacgctgcgt
caggtgggttgccttaaccaacgcgacagtgaacgtctgatggcgcagttcacggagaat
ctgcgtgcgctgacggaggcctgtctggcacagctacgttacggcactgtctttaccccc
agcgacttcccggcggtgatgctgagccagacgcagctcgatagcctgtcgcagcgttat
gacatcgacacgctgttgccgctgtcatcgctccagcagtcaatgctgtatcaccgtctg
cgctgcccgcaggacgatgcttatcatctgcaaacgccgattcgctatgcgcaggcgctg
gatgtggaaggctatcgtcaggcatggcagcgtcagattcagcgtttcccggcgctgcgt
gccgcgttggaaagtgagtgtgccagcgtgcaggtgattgtgacgcaggcagacctgcct
ttctactatcaggatgtggcgcaggaggccgatccactggctgtcatcgaacgttatcgc
cagcaggatttacgcaccggatttaacttgtcgcagccgccgctgttgcgcattgcctgt
ttccgtttgggtgagcaggattaccgggtgctcctgagctgtcaccacagcgtgattgat
ggctggagcggcccgcaactgctgggcgcggtacaccgtgattatcagatgttgatgaac
ggcgaaacatttatgcatggcgaaacatccgcgattcaggtggatcgtgcttatgtggat
tatgcgctacacgccgtggcgcagcagtccgctgtcgaggctttctggcagcaacggcag
ccgctgctggcgcagacgaacgatgtcgcgatgctgtttgcggcgtcggggaaacgcgcc
gatctcagccagcatctgacacaggttgaaccgcaggtcaccggcgtgagcctgaacgag
caggatcaggctgcactcatcgcctttgcccgcgaggtgggcgttacgcacagcattatc
gcgcaatacgcctggcaccggctgctggcgcggtcgaccggcgatgcggtcagtattgtc
gggaacgtgctgtcgggcagggaaagtccggtggaggacgtggcgagcagtgtgggtctg
tacatcaatagcctgccgctggcgctgagctggcagcagccggtatcgctgcaacagcat
ctggtgcagttgcagaatgagctgatggcgatgaaccagcatgctacgcagtcgctgatt
gccctgacggccggacgctcgcgtctgttcaacagcctgtttatttatgaaaactatccc
gttaatgaaaatcggcctggcgcaaaagcagaacagggccaacgcgctgacgatccgcat
cggctatctcccgagttctccgccgcctatgaaaaagtcgagatgccgctgaatctggtg
gtgcgtgagcaggcgggctgcatgctgctgcgcttcgagtttgacgctgatgtgctggac
agtgcgcaggcgcgtcgggtgctgatgcgctggcatgatgaagtggtcgcgctaatcaat
agtgcgccgcagcagccagccgagattatcgggcatgagaaagcgacaggctcggtggtt
gcgcagaaaacggtggcagatagcggtcttagccagccggatacgccgtctgcccagtcg
ctgctgcgtgtgtgggcgcaaacgctacatctcaatgaatccggcctctggtcgcagacg
ctgtgtgaaagtggtgtcgattcgctgcagcgtattgcgctggcacaggcattgagccgt
gcgttagcgcagctggtgagtgtggcgcttttacagcgctacccttcaccgcaggcgctg
agcgggtatctggcacagtcgagggttaccgccaatgaggaaacgctgtcatga
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