Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_005730
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Entry
PCC21_005730 CDS
T02320
Name
(GenBank) putative sigma-70 factor (RpoD)
KO
K03086
RNA polymerase primary sigma factor
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PCC21_005730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcc03021
]
PCC21_005730
Transcription machinery [BR:
pcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCC21_005730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AFR01976
LinkDB
All DBs
Position
complement(642264..644099)
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AA seq
611 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSSEEMDDDDEEEDDEEEEDDNSIDPELAREKFTELREQYETTRQVIKAHGRSH
ALAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIIKLCVEQCKMPKKNF
VTMFTGNETNNTWFAAAVAMGKPWSEKLNDVEEDVTRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctgcttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactcggatcag
atcgaagatatcatccagatgattaacgacatgggcatccaggtgatggaagaggcaccg
gatgcagacgatctgttgctggccgaaaacaccaatgatgccgatgaagatgcggcagag
gctgctgcgcaggttctatccagtgttgaatcggaaattggtcgcaccaccgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacgcgcgaaggcgagatcgat
atcgccaagcgtattgaagacggtatcaaccaggttcagtgctctgttgcggagtatcct
gaagccattacttacctgctggaacagtatgaccgcgtcgaagcgggcgaaagccgcctg
tccgacctgattactggcttcgtcgatcctaatgcggaagaggacattgcgcctaccgcg
actcacgttggttctgagctttcgagcgaagaaatggacgatgatgacgaggaagaagac
gacgaggaagaagaagacgacaacagcatcgatcctgagctggcacgtgagaagttcacc
gagctgcgtgagcaatatgaaacgacccgtcaggttatcaaagcccacgggcgtagccat
gcgctggcagcacaggaaatcctgaatctgtccgaagtcttcaaacagttccgtctggtg
ccaaaacagtttgatttcctggttaacagcatgcgttccatgatggatcgcgttcgtact
caggaacgtttgatcattaagctgtgtgttgaacagtgcaaaatgccgaagaaaaacttc
gtcacgatgttcactggcaatgaaaccaacaacacctggtttgccgcagcagtcgcaatg
ggcaaaccatggtctgaaaagctgaatgatgttgaagaagacgtcacccgcagcctgcaa
aaactgcagcagatcgaagaagaaactggcctgacgatcgagcaggttaaagacatcaac
cgccgtatgtcgattggtgaagcaaaagcgcgtcgtgccaagaaagaaatggtggaagct
aacctgcgtctggttatttctatcgcgaagaaatacaccaaccgtggtttgcagttcctc
gacctgattcaggaaggtaacatcggtctgatgaaagcggtagataagtttgagtatcgc
cgtggctataaattctcgacctatgcgacctggtggatccgtcaggcgatcacccgttct
atcgccgatcaggcgcgtaccatccgtattccggtacacatgattgagacgatcaacaaa
ctgaaccgtatctctcgtcagatgttgcaggaaatgggtcgtgagccgacgccggaagag
ctggctgagcgtatgctgatgccggaagacaaaatccgtaaagtgctgaaaatcgcgaaa
gagccgatttcaatggaaaccccgattggtgatgatgaagattcacatttgggcgatttc
atcgaagatacgacgctggagctgccgctggattccgccacgtcggaaagcctgcgttct
gcgacccacgacgtactggctggcctgaccgcgcgtgaagcgaaagtcctgcgcatgcgt
ttcggtatcgatatgaacaccgaccatacgctggaagaagtgggcaaacagtttgacgtt
acgcgtgaacgtattcgtcagatcgaagcgaaagcgctgcgtaaactgcgccacccaagc
cgttccgaagtgctgcgtagcttcctggatgattaa
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