Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_006190
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Entry
PCC21_006190 CDS
T02320
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC21_006190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcc03019
]
PCC21_006190
03009 Ribosome biogenesis [BR:
pcc03009
]
PCC21_006190
Enzymes [BR:
pcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCC21_006190
Messenger RNA biogenesis [BR:
pcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC21_006190
Ribosome biogenesis [BR:
pcc03009
]
Prokaryotic type
rRNA helicases
PCC21_006190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AFR02022
LinkDB
All DBs
Position
695479..697377
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AA seq
632 aa
AA seq
DB search
MTDLVTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPVFRPRREFRDRDESRSDSRGDRRRDPRDSRDSRDGDRPQ
RRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLMGDAVAQPERRGGGRPGGERRDGAAPRRSFGGGERRE
GNGNGGERRERSFNRDNRDGASRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttagtaacttcttttgccgatttggggctgaacacctctatccttaatgcc
ctgactgatttgggctatgaaaaaccgtctccgattcaggcggaatgtattcctcacctg
ctgaatggtcgcgatgtgctgggtatggcacagaccggtagcggtaaaacagcagcgttc
tctctgccattactgaacaatctgaaacctgaacttaaagcaccacagattctggtgctg
gcaccgacccgcgagctggcggtgcaggtagcagaggcctgcaatgatttctccaaacat
atgcacggcgtgaatgttgtcgcactgtacggcggccagcgctatgacgtgcaactgcgc
gctttgcgtggtggtgcacagatcgttgtgggtacgccaggccgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtttggtgctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgaa
catcagactgcgctgttctctgcgaccatgcctgaagcgattcgtcgcattacgcgccgt
ttcatgaaagatccacaagaagttcgcattcaatcaagcattactacgcgcccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaaaaacgcgacgctggaa
gtggccgaagccctggagcgtagcggttacaacagcgccgcgctgaacggtgacatgaat
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggtcgtctggatatcctgatc
gcgaccgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtagtgaactac
gatatcccgatggatgccgagtcttacgtccaccgtattggtcgtaccggtcgtgcaggt
cgtgcgggccgcgctctgctgttcgtcgaaaaccgtgaacgtcgcctgctgcgcaacgtt
gaacgcacaatgaagctgaccattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaaattcgccgctaaagtacagcaacagctggaaagcagcgatctg
gacatgtaccgtgcactgctgacaaaactgcaaccacaggaagagctggatgtcgaaacg
ctggctgctgcgctgctgaaaatggcgcagggcgaacgtcctctgattctgccgccagat
ccggtattccgtcctcgtcgcgaattccgcgatcgtgatgagtctcgcagtgattcacgt
ggcgatcgtcgtcgtgatcctcgcgattctcgtgacagccgtgacggtgaccgtccacag
cgtcgtgagcgtcgtgatgctggcgagatggaactgtatcgcattgaagtgggtcgtgat
gacggcgttgaagttcgccacattgttggtgccatcgccaacgaaggtgatatcagcagc
cgctacatcggtaacatcaagctgttcgcgtctcactcgacgattgaactgccgaaaggt
atgccgggcgacctgttatcacatttcacccgtacgcgtattctgaataaaccaatgaat
atgcagttgatgggtgatgcagttgcacagccagaacgtcgtggcggtggtcgtcctggt
ggcgaacgtcgtgatggcgcagcaccacgtcgctctttcggcggtggtgaacgccgtgaa
ggtaacggcaacggcggtgagcgtcgcgagcgttctttcaaccgtgacaaccgtgacggc
gcttcacgcgctccacgtcgtcgtcctgctgacgcataa
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