Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_006360
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Entry
PCC21_006360 CDS
T02320
Name
(GenBank) RNA polymerase ECF-subfamily sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PCC21_006360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcc03021
]
PCC21_006360
Transcription machinery [BR:
pcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCC21_006360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
GerE
HTH_28
HTH_11
Xre-like-HTH
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AFR02039
UniProt:
A0AA85ZIR5
LinkDB
All DBs
Position
complement(716438..716980)
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AA seq
180 aa
AA seq
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MSSANIDTSADLHQLYCQHHGWLQGLLRKRLGNLCDAADLAQDVFLRLLLKPRQFDSHAG
ARAYLSVMAQGMCVDLWRKREIERVWLTSLAEQPESVALSAEDSNIILETLYQVDAMLRA
LPEKVRAAFIMAQVQGLPYREIATALGVSERMVKKYMAQAMLHCVLLEAEIDADGQAAHS
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagccaatattgatacctcagcagatctgcatcagctttattgtcagcatcac
ggctggctgcaagggctattgcgcaaacgactggggaatctgtgtgatgcggccgatctg
gcgcaggatgtatttttacggctgttgctgaaaccgcgccagttcgacagccacgcaggc
gcgcgggcttacctgagcgtgatggcgcagggcatgtgcgtcgacctctggcgcaaacgg
gaaattgagcgcgtctggctcacttcattagccgaacagccggagtcggttgccctgtcg
gcggaagacagtaacatcattctcgaaacgttatatcaagttgatgccatgctgcgtgcg
ctgccagagaaggtgcgtgccgcctttatcatggcgcaggttcagggattaccctatcgg
gaaattgctacggcgctgggcgtttccgaacgcatggtgaaaaaatacatggcgcaggcc
atgctgcactgtgtactgctggaagcggagatagacgcggacggtcaggccgctcattca
tga
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