Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_007220
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Entry
PCC21_007220 CDS
T02320
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PCC21_007220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcc03021
]
PCC21_007220
Transcription machinery [BR:
pcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCC21_007220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
Sigma70_ECF
HTH_23
GerE
HTH_28
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AFR02125
LinkDB
All DBs
Position
820763..821287
Genome browser
AA seq
174 aa
AA seq
DB search
MKSPAAVCPNQPETLTVQQIYHDHHAWLQAWLRRRLGCSQQAADLAQDTFLRLICQHQTD
LIREPRAWLTTVAHGLVVNQWRRKEIENAYLQVLAEQEFTFSPSLEQQAMVVDALMAIDQ
MLATLPGKVRQAFLLVHLDGLTYRQVAEQLAVSERMVKKYMAQAMLNCLLCQDL
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
gtgaagagtcccgccgctgtctgccccaatcagcctgaaaccttaaccgttcagcagatt
tatcatgaccatcatgcctggttacaggcgtggctgcgtcggcgtttggggtgttcacag
caggctgcggatctggctcaggatacgtttctacgtttgatctgccaacatcagaccgat
ctcatccgtgaaccgcgtgcctggctaacgacggttgcccacgggctagtggtaaatcaa
tggcgacgtaaagagatcgagaatgcctatcttcaggtgctggcagagcaggagtttacg
ttttctccctcgctggaacagcaggctatggtggttgatgcgctgatggccatcgaccaa
atgctggcgacgctgccgggtaaagtgcgtcaggcattcttgctcgtgcatcttgatgga
ctgacctatcggcaggttgctgaacaattagccgtttccgagcggatggtgaaaaaatat
atggcacaggcaatgctgaattgtctattgtgtcaggacttatga
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