Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_009890
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Entry
PCC21_009890 CDS
T02320
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03030
DNA replication
pcc03430
Mismatch repair
pcc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCC21_009890
03430 Mismatch repair
PCC21_009890
03440 Homologous recombination
PCC21_009890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcc03032
]
PCC21_009890
03400 DNA repair and recombination proteins [BR:
pcc03400
]
PCC21_009890
Enzymes [BR:
pcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PCC21_009890
DNA replication proteins [BR:
pcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PCC21_009890
DNA repair and recombination proteins [BR:
pcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PCC21_009890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AFR02392
LinkDB
All DBs
Position
1115459..1118941
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGA
GVKPIIGADFCVESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAGPTIDRDW
LVEHQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIRTSRPDEES
YLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYM
RSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVQCSKKGL
EERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTVVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARARLRFGAAWRVTPAD
ALLNELRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggccaaagtcggtccgctggtaaaaaaagcggcggcactcggcatgccagcgctggcg
attactgattttaccaacctgtgtgggctggttaaattctatggcggcgcgcatggcgcg
ggagtcaagcccattatcggtgcagatttctgtgtcgaaagcgacgaattgggggatgag
ctcgcgcatcttaccgtcctggccatgaataatgctggctaccagaatcttacgctgctg
atttcccacgcttatcaacgaggttatggcgctgccgggccgacgattgaccgggattgg
cttgttgaacatcaggaagggctgattttactgtctggtggccgccggggtgatgtcggt
cggtttttgctgcgtggtaaccagacgcaggccgaacagtgtctggccttctatcaggaa
catttcccccagcgttattatctggaactgatccgcacgtctcgccccgatgaagaaagt
tatttgcacgccgccgttgaactggcgacgaagcacggggtgcccgtggtggcaaccaat
gaagtgtgttttatcagcaccgatgattttgacgctcacgaaatccgtgtggctattcac
gatggctacacgcttgacgatcccaagcgtccacgtaattacagcccacagcagtacatg
cgttccgaagaggaaatgtgcgagctgttcgcggatatccccgaagcgctggcgaacagc
gttgaaattgccaagcgctgtaacgtaacgattcgtctgggtgagtatttcctgccgcag
ttcccaacgggcgacatgagtacggaagattttctggttcagtgctcgaaaaaggggctg
gaggagcgtctcgaattcctgttccccgatccggaagtgcgtgctgagcgtcggcctgaa
tatgatgagcgtttggatattgaactgggcgttatcaaccagatggggttccccggctac
ttcctgatcgtaatggaatttattcagtggtcgaaggataacgatgtacctgttggaccg
ggacgtggttccggtgcgggctcgttagtggcctatgcgctgaaaatcaccgatctggat
ccgctggaattcgacctgctgttcgaacgcttcctcaatcctgaacgtgtttccatgcct
gactttgacgtcgatttctgtatggaaaaacgcgacaaagtcatcgatcacgtcgcggaa
atgtacgggcgtgatgcggtatcgcagattatcaccttcggtacgatggcggcgaaagcg
gttattcgtgacgtagggcgcgtgcttgggcacccttatgggtttgtcgatcgtatttca
aagctggtgccgcccgatccgggcatgacactggaaaaagcgtttgctgctgaaccgcaa
ctgccggaaatttatgaagccgatgaggaagttaaggccctcatcgatatggcacgtaag
ctcgaaggcgtaacgcgtaacgccggtaaacatgcgggtggggtggtgatatcccccacc
aagattaccgatttcgcgccgctgtattgcgatgcggaagggaaccatccggttacccag
ttcgataagaacgacgtggaatatgccgggctggtgaagttcgacttccttggcctgcgt
acgctgactatcatcgactgggcgctggggatgattaacgcccgtcgcgcgaaacaaggg
ctagagccgattgatattgcggcgattccgctcgaagataagaaaagcttcgacatgctg
caacgctcggaaaccacagcggtattccagcttgaatcgcgcggcatgaaagatctgatc
aaacgtcttaagcccgactgctttgaagatatgatcgcactggtggcgcttttccgccct
ggtccgctgcaatccggcatggtagataacttcattgaccgtaagcatggccgtgaagcg
atctcgtatcctgatatcgaatggcaacacgagtcactcaagcctgttctggagccgacc
tacggcattatcctgtatcaggaacaggtcatgcagattgcgcaggttctggcgggctat
acgctgggcggcgcggatatgctgcgtcgtgcgatggggaaaaagaacccggtcgaaatg
gcgaagcagcgtggtggcttcgaagatggtgccaaatctcgcggtgtgaacggcgaattg
gcggttaagattttcgacctggtggaaaaattcgccggttatggctttaataaatctcac
tccgcggcctatgcgctggtgtcttaccaaacgctatggctgaaggcgcactatccggca
gaattcatggcggccgtaatgacggccgatatggacaacacggataaagtggtcggtctg
gttgatgaatgctggcggatggggttaaaaatcctacctccggacatcaacagcgggctg
tatcacttccacgttaatgacgatggcgagattgtttacggcatcggtgcgattaaaggc
gtgggtgaaggtccgattgaggcgattatcgaagcgcgtaatcagggcggctattttaga
gagctgtttgatctctgcgcacgtaccgacattaaaaagctgaaccgccgcgtgttggaa
aagctgattatgtctggggcgtttgaccgtctggggccgcatcgcgccgcgttgatgaat
tcattgcctgacgcgctgaaggctgccgatcagcacgcgaaagcggaagcgattggtcag
gtggatatgttcggcgtgttggccgatgctcctgaacaggttgagcaatcctacagtacg
gtaccaccgtggccggagcaggtggtgctggatggtgaacgggaaacgctggggctgtac
ctgaccggccacccgatcacgcaatatattaaggaaattgaacgctatgccggtggcgtg
cgtttgaaagatatgcacccgacggatcggggtaaaatgaccactgtcgttgggctggtg
ttggcggcccgcgtcatggtcaccaagcggggtaaccgtattggagtctgtacattggac
gatcgttccggtcgccttgagataatgctgtttaccgatgcattggaaaaatatcagcat
ttacttgagaaagaccgtatccttatcgccagtggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgaccgtccgagagttaatggatatcagtgaagcgcgggaaaaatac
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagctattaaaccgt
ctccgccaatcgttggaaccccaccgatcggggacgatcccagtgcatctctattaccag
cgtgaagatgcgcgcgcccgactacgtttcggcgcagcatggcgtgtaacgcctgccgat
gcgctactgaacgagctgcgcacattagtgggtaatgagcaggtggaactggaatttgac
taa
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