Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_010090
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Entry
PCC21_010090 CDS
T02320
Name
(GenBank) RNA polymerase sigma factor FecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PCC21_010090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcc03021
]
PCC21_010090
Transcription machinery [BR:
pcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCC21_010090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
HTH_24
HTH_7
TnsD
HTH_11
HTH_28
HTH_36
HAC6_helical
HTH_SB
DUF2774
Motif
Other DBs
NCBI-ProteinID:
AFR02412
LinkDB
All DBs
Position
complement(1137395..1137919)
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AA seq
174 aa
AA seq
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MISDHATPSAELTLESLYGSHHGWLKHWLTGKLQSSFDADDIAQDTFLRVMNGESLTAIR
DPKSFLCTVAKRVMVDLFRRNALEIAYLDRLAQLPEALAPSPEIQQQQLETLQQVDLMLD
GLSHKARQAFLLSQLDGMAYGEIATRLNVSISSVKKYVAKATEHCLLFRLEHGL
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgatatctgaccacgccacgccctctgctgaactgacgctcgaatcgctctatggttcg
catcacggctggctgaagcactggctaacgggcaagctccaatcctcctttgacgccgat
gatattgctcaggacaccttcctgcgcgtgatgaacggcgagtcgctgaccgcaatccgc
gatcctaaatcgtttctatgtaccgttgccaaacgcgtgatggtcgatctctttcgccgc
aatgcgctggagatagcctatctggataggctggcgcagttgccggaggcgcttgcgccc
tcaccagagatccagcaacagcagcttgagacgctccagcaggtggatctcatgctcgac
ggcctgagccacaaagcacgacaggcgtttttgctttcccagcttgatggcatggcctac
ggcgagatcgccacacggctgaatgtctccatcagttccgtcaaaaaatacgttgccaaa
gccacggagcattgcctgctgttccgtctggagcacgggctgtga
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