Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_015340
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Entry
PCC21_015340 CDS
T02320
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCC21_015340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcc03400
]
PCC21_015340
DNA repair and recombination proteins [BR:
pcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCC21_015340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCC21_015340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SBDS_domain_II
UB2H
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
AFR02937
LinkDB
All DBs
Position
1753927..1755939
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AA seq
670 aa
AA seq
DB search
MSKVFTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MMLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YSRNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPR
YTIYPKTHYVTPRERILQAMEDIKVELADRKKVLLVNDKLVEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLRGKAILYGDKITASMAKAIGETERRREKQEAYNTEHGIVPQGINKKISDILQLG
QPTNKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVQ
ALRAQFIAVS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagtatttacactgaattccgactttaaaccggcaggcgatcagcctgaggcc
attcgtcgtttaaaagagggcctggaagacgggttagcgcaccaaacgctgctcggggta
acaggttcaggtaagacgttcacgatcgccaacgtgattgccgacctcaatcggccgacg
atgatgttggcaccgaataaaacgctggcagctcagctgtatggcgaaatgaaagaattc
tttcctgataatgccgtcgagtacttcgtgtcgtactacgactattatcagccagaagct
tacgttccaagctcggataccttcatcgaaaaagacgcgtcggttaacgaacatatcgaa
cagatgcgcctttccgcgacaaaagcgctgctggagcggcgcgatgtgatcgtcgtggcc
tcggtatccgcgatctacggtctgggcgatcccgatctctatctaaaaatgatgctgcac
ctgacgcaggggatgctgattgaccagcgcgctattttgcgacgcctggccgaattacag
tattcacgcaacgatcaggcgtttcagcgcggtacgttccgcgtgcgtggtgaggtgatc
gatatcttccctgcggaatctgacgaaatcgcgctgcgtgttgaactgttcgatgaggaa
gtggagcggttgtcgctgtttgacccgctgacggggcacgtcctccagacggtgccgcgc
tataccatctatccgaaaacgcactacgtcacgccgcgtgagcgtattttgcaggcgatg
gaagacatcaaggttgaactggccgaccgtaaaaaggtgctgctggtcaatgacaaactg
gtggaagagcagcggctgagtcagcgcacgcagtttgatctggagatgatgaacgaactg
ggctactgctccggtatcgaaaactactcgcgctacctttctggtcgcggtcccggcgag
ccgccaccgacgctgtttgactatctgcctgcagacgggctgctggtcatcgatgaatcc
cacgtcacggttcctcagatcggcggtatgtatcgcggtgaccgcgcgcgtaaagagacg
ctggtcgaatatggtttccggctgccttcggcgctggataaccgaccgatgaaatttgaa
gaatttgaagcgctggctccacagacgatctacgtctctgcgacgccgggtaactatgaa
ttggaaaaatcgggcggtgaagtgatcgatcaggtggtgcgtcccaccggattgctcgat
cccatcatcgaagtgcggcctgtcgcaacacaggtggacgatctgctttccgaaattcgt
ctgcgtgccgcgattaacgaacgggtactggtcaccacgctgaccaagcgaatggcggaa
gacctgacggagtatctggaagagcacggcgagcgggtacgttatctgcactcggatatc
gataccgtcgagcgtgtggaaatcatccgcgatttgcgccttggtgagttcgacgtgctg
gtgggtatcaacctgctgcgtgaaggactggatatgcctgaagtgtcgctggtggcgatt
ctggatgccgacaaagagggcttcttgcgctctgaacgttccctgatccagacgattggc
cgtgcggcacgtaacctgcgcggcaaagccattctctacggcgacaagattacggcatca
atggcgaaagcgattggtgaaacggagcgtcgccgcgagaagcaggaagcctacaacact
gagcacggcattgtgccgcagggaatcaataagaagatttccgatatcctgcagttgggg
cagccgacgaacaaaggcaaagggcgtggcaatcgtaaagcggcagaaccagcagcacgc
tatgaacttatgacgccgaaggcgctggagttgaaaatccgcgagttggaaagcaagatg
ttgacgcacgcgcagaaccttgaatttgaagaggcagccgcgctacgcgatgaagtacaa
gcactgcgcgcacaatttatcgctgtatcttaa
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