Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_015530
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Entry
PCC21_015530 CDS
T02320
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC21_015530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcc03019
]
PCC21_015530
Enzymes [BR:
pcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCC21_015530
Messenger RNA biogenesis [BR:
pcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC21_015530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFR02956
LinkDB
All DBs
Position
1774150..1775562
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AA seq
470 aa
AA seq
DB search
MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLP
VKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGNRGGGGARNASPRAQSGAPRGQGER
RPADGNRQPRKAGGNSDSPWGGNKGNSGKGSGEGQRRAPRPQNRSKPADK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgcgcgattgacgagcagggt
tatcgcgatcctactcctgttcagcgtcaggcgattcctgtcgtgctggaagggcgcgat
ttaatggccagcgcacaaaccggtacgggtaaaacagcgggctttacgctgccgttatta
caattgctgaccagccgtgaagcgcagcataaagggaaaggtcgccgtccggtacgcgcg
ctgatcctgacgccaacccgtgagttggctgcgcagattgatgaaaatgtgaaggcgtat
agcaagtatctgagcctgcgttcactggtcgtattcggtggggtgagcattaacccacag
atgatgaaactgcgcggtggcgtagatattctggtggcaacgccggggcgtctgctcgat
ctggagcatcaacgcgccgttgacctgtcacaggttgaaattctggtgctggatgaagcg
gaccgtatgctggatatgggcttcattcacgacattcgccgagtgctggcgaagctgcct
gttaaacgtcaaaacctgctgttctccgcgaccttctctgatgagatcaaagcgctggcg
aacaagctgctgactaatcccgcctcggttgaagtcgtgcgtcgtaatacgccgtctgaa
ctggttacgcagcacgtgcattttgttgataaacgccgcaagcgtgaactgttgtcgcag
ttgattggtgaaaataactggcagcaggtgctggtctttacccgcaccaagcacggcgct
aaccatctggctgaactgctggaaaaagacggcattactgctgccgctatccacggcaat
aaaagtcagggcgcgcgtacgcgtgcactggcaaactttaaagacggcagcattcgtgtg
ctggtggcgacggatatcgccgcgcgtggtctggatatcgaccaactgccgcacgtggtg
aactatgagctgccaaacgtgccggaagattacgttcaccgtatcggtcgtaccggtcgt
gcggaagcaacgggtgaagcgctgtcactggtctgtgtggatgagcacaaactgctgcgc
gacatcgagcgtctgttgaagcgtgagattccacgtatcgctatcgaaggctacgagccg
gatccgtccatcaaggccgagccgattgtgaatggtcgtcagggcaaccgtggcggcggc
ggtgcgcgtaacgcctctcctcgcgcacagtctggcgcgccacgcggtcagggcgaacgc
cgtccggccgatggcaatcgccagccgcgtaaagcgggcggtaatagcgatagcccgtgg
ggtgggaataaaggcaatagcggtaagggcagtggtgaaggccaacgccgcgcgccgcgt
ccgcaaaaccgcagtaagccagcggacaagtaa
DBGET
integrated database retrieval system
