Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_023560
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Entry
PCC21_023560 CDS
T02320
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcc03019
]
PCC21_023560
Enzymes [BR:
pcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCC21_023560
Messenger RNA biogenesis [BR:
pcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PCC21_023560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
T2SSE
AAA_19
HA2_N
nSTAND3
NACHT
ResIII
PhoH
CCDC32
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AFR03759
UniProt:
A0AA85ZLC9
LinkDB
All DBs
Position
complement(2681353..2685240)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLRRRLQGAAKVSSPQAQAAIAQEIEGEIVAARQKVENR
RASCPAIHYPEQLPVSQKKDEILEALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSDRDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINLAENGHYR
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMIITAALSIQDPRERPMDKKQASDEKH
RRFADKDSDFLAFVNLWDYLRDQQKALSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCALLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPTLAREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDTWWKAASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDEKKRTQREGKDLNALKDQLKDKVQQTLSSVVDDGLEQRGLHVWSFGSL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLIESSGGPVWQEEAFQQLHEKVRAEL
NDTVVDIARQVEQILTAVFTINKRLKGRVDMAMALALSDIKSQMNGLVFRGFVTENGWQR
LPDVLRYLQAIERRLEKLAQDVHRDRAQMLKVEHVQQAWQQWWNKLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatcgg
caacgtctgcgccgccgtttgcagggcgcggcgaaggtcagcagcccgcaggctcaggcg
gcgatcgctcaggaaattgagggggaaatcgttgccgcacgccagaaagtcgagaaccgg
cgggcaagctgtccggcgattcactaccctgaacagctccctgttagccagaaaaaagac
gagatactggaggcgctgcgtcatcatcaggtgattatcgtcgcgggtgagacgggatcg
ggtaagaccacacagttgccgaaaatttgtctcgaactagggcgcggcgtgcacggtttg
atcggccacacgcagccgcgtcgtctggcagccagaaccgttgctgaccgcattgctgcc
gagctggaaacgccgctgggtggcagcgtagggtataaagtccggtttaacgatcaggtg
agtgacaatacgctggtcaaactgatgaccgacggtattctgctggcggaaattcagcag
gaccgcctgttgatgcagtatgacacgctaatcatcgatgaagcgcacgagcgcagtctg
aatatcgatttcatcatgggctatttgcgccagctgttgccaaagcgccctgatttaaaa
gtgattattacgtcggcaaccatcgatccacagcgcttctcccgccactttaataacgca
ccgatcattgaagtgtccggccggacctatccggtggacgtgcgctatcgtcccgtggtg
gaagacgctgatgacagcgatcgcgatcagctacaggcgatttttgatgcggtcgatgaa
ctgacgcgcgaagggccgggggatattctggtcttcatgagcggcgaacgtgaaattcgc
gatactgcagaggcgctgacccgtctggacttgccgcatactgaaatcctcccgctgtac
gcccgcctgtcgaatcaggaacagaaccgcgtctttcagtcacatcacggtcgccgcatc
gtgctggcaaccaacgtggcggaaacctcgctcaccgtgccggggattcgctatgtgatc
gatccgggcaccgcgcgcatcagccgctatagcttccgtaccaaggtacagcgcctgccg
attgaacctgtctctcaggcgtcggcgaatcagcgtaaaggacgctgtggccgtgtcgcc
gctggggtgtgtattcgtctctattccgaacaggatttcctgtcacggcctgaatttacc
gaccctgaaattcttcgcaccaatctggcttccgttattctgcaaatgacgtcgctgggg
ctaggcgatatcgccgcgttcccgtttgttgaagcgccggataaacgcaacattcaggat
ggcgtgcggctgctggaggaattaggcgcgattaatctggcggagaacgggcattaccgc
ctgacgccgcaggggcaacagctggcacagttaccgatcgatccgcgtttggcgcgaatg
gtgctggaagcgcgtaaaactggctgtgtgcgtgaagtgatgatcatcaccgctgcgctg
tcgattcaggatccgcgcgaaaggccgatggataagaaacaggcatcggatgagaaacac
cgccgtttcgctgataaagactccgattttctggctttcgtcaatctgtgggattacctg
cgtgaccagcaaaaagcgctgtcttccagccagttccgccgccagtgccgcaccgatttc
cttaactacctgcgcgtgcgcgaatggcaggatatctacacgcagctgcgtcaggttgtg
aaagaactggggctgccggtcaatagcgaaccggccgattacctgagtattcactgcgcg
ctgctcaccggcctgttgtcgcatatcgggcagaaagatattgagaaacaggagttcagc
ggtgcgcgtaacgcacggtttgcgattttcccaggctccgggttattcaaaaaaccgcct
aagtggacgatggtggcggaactggtggaaaccagccgcctgtggggacgcattgccgcg
cgtattgaacccgagtggatcgagccgctggcccagcatctgattaagcggagctacagc
gatcctcattgggagaaagcacagggcacggtgatggcgcaggagaaggtgacgctcttc
gggctgccgattgtcgcggcgcgtaaggtgaactacagccaaatcgatccgacgctggcg
cgtgaaatgttcattcgtcacgcgctggtggaaggcgactggcaaacgcaccacgccttt
ttccgcgccaacctcaaattgctggcggaagtggaagatctcgaacataaatcgcgccgc
cgcgacattctggtggatgacgaaacgctgtttgctttctatgaccagcggttgccgcac
gatgtggtgtcgtcgcgccattttgacacatggtggaaagccgctagccgggataatgcc
gacctgcttaattttgaaaagagcatgttgattaaagacggcgcggagaaggtaagcgcg
ctggattatccgaacttctggcatcagggtagcctgaaattacgcttgtcttatcagttt
gaaccgggcgcggacgccgatggcgttacggttcatattccgctgcctattctcaatcag
gtgcgtgaagagggcttcgagtggcagattcccggcgttcgccgtgaactgacaattgcg
ctgattaagtcattgcctaagccgttacgtcgtaacttcgtacccgcgccgaactatgcc
gaagcgtttctggcccgtaccacgccattagagaaagggctcttggatgcgctggagcgt
gagttgagactgatgacgggcgtcacggtgccacgcgaggcgtggcagtgggatcaggtg
cccgatcatctgaaaatcacgttccgcgttattgatgagaagaagcggacgcagcgcgaa
ggcaaagacctgaatgcgctgaaagatcagctcaaggataaagtgcagcaaacgctgtca
tccgtagtggatgacgggctggagcagcgcggtctgcacgtctggagctttggttcgctg
cctgactgctatgaacagaagcgtggtggctactcggttaaagcctatccggcgttggtg
gatgaaaaggatagcgtagcgattcgcctgttcgacacgccgcaccagcaacagcaggtg
atgcggcaggggctgcgccgtctgttattgctgaacattccgtcgccgattaaatatctg
catgaaaagctgccgaacaaggcgaaactcggtctttatttcaatccgtacggcaaagta
ttggatcttatcgatgactgtatcgcctgtgcggtggataagctgattgaatcatccggt
ggtcccgtctggcaggaagaggccttccaacaactgcatgaaaaagtgcgtgcggagctg
aatgatacggtggttgatatcgccaggcaggttgagcaaatcctgacggcggtcttcacc
attaacaagcgtctgaaagggcgtgtagatatggcgatggcgctggcgttaagcgatatc
aagagccagatgaacgggctggtgttccgtggctttgtgaccgaaaacggctggcagcgt
ctgccggacgtgctgcgttatctgcaagcgatagagcgccgtctggagaaactggcgcag
gatgttcaccgcgaccgggcgcagatgctgaaagtggagcacgttcaacaagcgtggcag
cagtggtggaataagctgcctgcggagcgacgtgacgacgacgatgtgaaagcggtgcgc
tggatgcttgaagagctgcgcgtcagctactttgcccagcagctaggaacgccgttcccg
atctcggacaagcgcgtattgcaggcgatggagcaggtcgaaggataa
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