Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_026200
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Entry
PCC21_026200 CDS
T02320
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC21_026200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcc03019
]
PCC21_026200
03009 Ribosome biogenesis [BR:
pcc03009
]
PCC21_026200
Enzymes [BR:
pcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PCC21_026200
Messenger RNA biogenesis [BR:
pcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCC21_026200
Ribosome biogenesis [BR:
pcc03009
]
Prokaryotic type
rRNA processing factors
PCC21_026200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AFR04023
LinkDB
All DBs
Position
2960894..2964220
Genome browser
AA seq
1108 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEALQWD
LAFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEH
ISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRL
RDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSI
LRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQTPH
YSVVRVRKGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEETAP
SIAKAAPAAAKPAEVAQPGLVSRLFSALKSVFASEPAVKAADSVDDKKAEEEKSTEGQRP
ERRNSRRQGNNRRDRGSRDNRDNRDNREQRDEQRRNKRQNEEAITDTRAAENAEKSSSEE
QPRREPRAERQRRRQDDRRQAPTEAKAQPVIDDADDSAAEQDKPTQVMPRRQRRQLTQKV
RVQSDAQQDTLSDSTAPVAAPSEQVQTYVKPSDAAVDNNEVDNEQNDANRANGENGGMPR
RSRRSPRHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMASGKVWVSYPLAQPQQAES
QQQDENVAAIETPLLPAVVEAAVTAQADTAESNTVENVAITEAVVQEEAAVTATAQSADV
IQDSNVVDVEVSTAGEETVEPVTENTAIDDAIAAVAVNAIEEVQPADTVATQVAEETVDA
VASENTVAENAAIEAVAEEQQADSIADSTEKADLAEPVSTPAVSAVQEVSSPQHIQDEPA
PAISAQSIVETSVSSVAKAAGVAEQPRYKLHATAPMTKAPAPAYQAEPARHSDWVRPAYP
FSGKGSAGGHAAVNQSTAPATKPTPASE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgatggtcaacgg
ctgtatgacttggacatcgaaagtccgggtcatgagcagaagaaagcaaatatctacaaa
ggtaaaatcactcgtattgaacctagtcttgaagcggcttttgttgattacggcgctgaa
agacacggtttcctccctcttaaagaaatcgcccgcgaatacttccctagcaactattct
tcccacggtcgtcctaacatcaaagacgtgttacgtgaaggtcaggaagtcattgttcag
gtagacaaagaagagcgtggcaacaaaggcgctgcactgaccacctttatcagtctggca
ggcagctatctggtcttaatgccaaacaaccctcgtgcgggcggtatttcacgccgtatc
gaaggtgacgatcgtaccgagctcaaagaagcgttgggatcgttgcaactgcccgatggc
atggggctcattgttcgtaccgctggcgtgggcaaatccgctgaagcgctgcaatgggat
ctggctttccgtctgaaacactgggacgcgatcaaaaaagccgccgaaggccgccctgca
ccgttcctgatccatcaggaaagtaacgtgatcgtccgcgccttccgcgactatctgcgc
ccggacattggcgaaatcctgatcgacaacccaaaaattctcgatctggcgaaagaacat
atttctgcgctgggtcgccctgatttcagcagcaaaatcaaattgtacagtggtgaaatt
ccacttttcagtcactatcagattgaatcgcagatcgaatcggcattccagcgtgaagtg
cgcctgccgtccggtggttctatcgttatcgatacgaccgaagccctgacagcaatcgat
atcaactccgcccgtgcaacgcgcggtggtgatattgaagaaactgctttcaataccaac
cttgaagccgcagacgaaattgcccgccagttgcgcctgcgtgacctcggtggcctgatc
gttatcgacttcatcgatatgactccggttcgtcatcagcgtgaagttgaaaaccgcctg
cgtgactccgtgcgtcaggatcgtgcacgtattcagatcggccggatttcccgctttggc
ctgctggaaatgtcgcgtcagcgtctgagcccttcactgggtgaatccagtcaccacgtc
tgcccacgctgtagcggtaccggtacgattcgtgacaatgaatcactttcactgtctatt
cttcgtctgatcgaagaagaagcgctgaaagaaaacaccaaagaagtccacgcgattgtt
ccagtccagattgcatcttatctgctgaacgagaagcgtgatgccgttaacgccattgag
aaacgtcaaggcggcgtgcgcgcaatcatcgtgccacacgacggtatgcaaacgccgcac
tactccgttgttcgcgtccgtaaaggcgaagaaaaaccgacgctcagctatttactgcct
cagcgtttggaaacggaaacgcagcagttgcaagacgaacagactatcgagcgcaaacag
cctgaacaacccgcgttagcaacgtttagcatggctgaaatgccagaggaaactgcaccg
tcgattgccaaagcagcgccggcggcggcgaaaccggcggaagtcgctcaaccaggcctc
gttagccgcttgttcagcgccttaaaaagcgtctttgcttccgagcctgcggtaaaagca
gcggatagcgttgacgataagaaggccgaagaagagaagtccaccgaaggtcagcgccct
gaacgccggaactcacgccgtcagggtaataatcgccgcgatcgtggatctcgtgacaat
cgtgacaatcgtgacaatcgtgaacagcgtgatgagcagcgccgtaataagcgacaaaac
gaggaagcgattactgacacccgcgctgcggaaaatgcggagaagtccagttcggaagaa
cagccgcgtcgtgaaccacgtgctgaacgtcagcgtcgtcgtcaagatgatcgccgtcag
gctccaactgaggcaaaagcacagccggttattgatgatgctgatgacagtgcagccgag
caggataaaccgactcaggttatgccgcgtcgccaacgccgtcagttgacgcagaaagta
cgcgttcagtccgatgctcaacaagataccctctccgatagcaccgcacccgtcgctgca
ccatctgagcaggttcaaacttacgtcaagccaagcgatgctgcggtagacaataacgag
gtcgataacgagcagaacgatgcaaatcgtgccaatggcgagaatggcggtatgccgcgt
cgttcacgtcgttctccgcgtcacctgcgagtcagcggccagcgccgtcgccgctatcgt
gacgagcgttacccgtctcagtcgccaatgcagttggagtttgccgctgcatcaccggaa
atggcatcaggaaaagtgtgggttagctatcctcttgcacaaccacagcaggctgaaagc
caacagcaggacgagaacgttgcagcaattgaaacaccgctgttacctgccgttgtcgaa
gccgcagtgactgcacaagctgacacagcagaatccaacacagttgaaaacgttgcgatt
actgaagccgtggttcaggaagaagccgctgtaaccgctacagcacaatctgccgacgtt
attcaggatagcaatgtagtggatgtcgaggtgagtactgcaggcgaagaaaccgtcgag
ccagttaccgagaacaccgctatcgatgatgctatcgctgccgttgctgtgaatgccatt
gaggaagtacaacctgctgatactgtggcgactcaggtcgctgaagaaaccgttgacgct
gttgcttctgaaaatacagtggctgaaaacgcagctatcgaagcggtcgcagaagagcag
caagcagatagcatcgctgattcaactgagaaagccgatctggcagagccggtttctacc
cctgcggtttccgcagtacaggaagtcagctcgccgcaacacattcaggatgagccggca
cctgctatcagcgcacaatcgattgtggaaacgtctgtatcgagcgtagcaaaagcagca
ggcgttgctgagcaacctcgttataaactccatgcgacagcaccaatgactaaagcgcca
gcaccggcataccaggcggagcctgctcgacacagtgattgggttcgtcctgcctatcct
ttctcaggaaaaggttcagcaggtggtcatgccgcagttaaccagtcaactgcgcctgca
accaagcctacaccggccagcgagtaa
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