Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_029160
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Entry
PCC21_029160 CDS
T02320
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcc03009
]
PCC21_029160
Enzymes [BR:
pcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCC21_029160
Ribosome biogenesis [BR:
pcc03009
]
Prokaryotic type
rRNA helicases
PCC21_029160
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Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFR04319
LinkDB
All DBs
Position
complement(3280916..3282298)
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AA seq
460 aa
AA seq
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MSTTSFSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGI
GLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL
VHAPHIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQ
TLLFSATYPEEIEQISSRVQREPQRFEIADGVEEPAIEQRFYETTKDQRLPLLIAILGHY
QPASCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKELELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLIEDY
LGMRIKWTSADEISRSGEVALEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGK
IDMFPMHAYVAIRKASAKRALQQLQKGKIKGKSCKARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaacctctttttcttccctcgcgctgcccgcagagcagttatccaatcttaat
gaactgggctataccgacatgacgcccgttcaggcggcgacgctgccggccgttctgagc
ggcgcagacgtgcgggccaaggcgaaaaccggtagcggtaaaacggcggcattcggcatt
gggttgctggatcgtattgtcgtgagcgactttaccacgcaggcgctggtgctgtgcccg
acgcgtgagctggccgatcaggtcagcaaagagctgcgccgtctggctcgttttgcacaa
aacattaagattctgacactgtgcggtggtcagccgatggggcaacagctcgattcgctg
gttcacgctccgcatattgttgtcgggacaccgggacgtattcaggaccatttgcgcaag
cagtcgctgtctctggatagcctgaaagtgctggtgctggatgaagcggatcgcatgctg
gacatgggcttcactgacgccattgatgatgttatttcctatacgccgtccgatcgccaa
actctgttattttccgctacatatccagaagagatcgaacagatcagctcgcgcgttcag
cgtgagccgcaacgttttgagattgcagatggtgtggaagagccggctattgaacaacgt
ttctatgagacgacgaaagatcagcgtctgccgctgttgattgccattttgggccattat
cagcctgcgtcctgcgtggtgttttgtaataccaagcgtgactgccagagcgtatttgac
gcgctggacatgcgcgggattagcgtatccgcgctgcatggcgatctggaacagcgcgat
cgcgatcaggttctggtgcgttttgctaaccgcagctgccgtgtgctggtagcaaccgac
gttgccgctcgcggcctcgatatcaaagagctggagctggtggtgaattttgagctggct
ttcgaccctgaagtccacgttcaccgcattggcagaacgggtcgcgcgggtacgaaaggt
cttgctgtcagcctgtgtacaccacaggaaatgaaccgcgctaacctgattgaagactat
ctcggtatgcgcattaaatggacatcggcggatgaaattagtcgcagtggtgaggttgcg
ctcgaaccagagatgatgacgctgtgcattgatggtggcagaaaagccaaaattcgtccc
ggcgatatcctcggggcgttaaccggtgatgcaggactaacggcagcggaagtcgggaaa
attgatatgtttccgatgcatgcttatgtcgctatccgtaaagctagcgctaagcgcgcg
ttgcagcagctccagaaaggcaaaatcaaaggaaaaagctgcaaggccagattgttaaaa
taa
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