Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_032320
Help
Entry
PCC21_032320 CDS
T02320
Name
(GenBank) Sigma 54 interacting domain protein
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcc03000
]
PCC21_032320
Transcription factors [BR:
pcc03000
]
Prokaryotic type
Helix-turn-helix
Other families
PCC21_032320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA_16
AAA_2
Mg_chelatase
HTH_8
AAA_3
nSTAND3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFR04635
UniProt:
A0AA86DFX0
LinkDB
All DBs
Position
complement(3657742..3659280)
Genome browser
AA seq
512 aa
AA seq
DB search
MQHALELALALTRQHDEAGLCDWLLETMQAAWQPQGMLLGMVDVSGRQLTCQGRVHETLV
ALSLGVDDFSHPLAYALHKNQARTWDSLYGGARIEHREFRQMLVSVGTNCGLHALPLLSE
SGKPLAVLALLDTPTRLQTLHQRGECERLAQVFCRQLMLLRELAHTRREQVALRDSLRQI
KDEGQSRREQETRVEATLIGRSIVIKELHQQIYQAAKHRLSVLIQGETGSGKDVVARLLH
QCSERADKPFIAINCAAIPENLIESELFGYQKGAFSGAQSNKIGLVEQANGGTLFLDEVG
DMPQSMQAKLLRVLETHSFRPLGAEKEVHSDFRLIAATHQPLEQQVSDGVFRQDLYHRLC
QCLLQVAPLRERPDDIRLLCEHFIGQFADKQQKHVGPLNRAFLRQLVAYDFPGNVRELRN
LLEVACAHTPDGEALSLASLPPELRERLTSSPPEEQDRYQHIHDLRIATQRYEAAVIEAR
LRQFQGNRLLVADSLNIPKRTLDHKCQKLEVN
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatgccctcgaactggcgcttgcactcacccgacagcatgacgaggccggtctg
tgcgactggctgctggagacgatgcaggctgcctggcagcctcaagggatgctactgggt
atggtggatgtcagcggcaggcaactgacctgccaggggcgagtgcatgaaacgctggtg
gcgctgagtctgggcgtggatgactttagccacccgctggcttatgcgctgcataagaat
caggcgcgcacctgggattctctctatggcggtgcccgcattgagcaccgtgaattccgg
cagatgctggtttctgtcgggacgaactgcgggctgcatgcgctaccgctgctgtcggag
agcggtaaaccactggcggtgctggcgctgctggatacgccgacgcgcctgcaaacgctg
catcagcgcggtgagtgcgagcggctggcgcaggtgttttgccgtcagcttatgttgctg
cgtgagctggcgcatacccggcgggagcaggtcgcgctgagagattcactccgccagatt
aaggatgaagggcagagccgtcgcgagcaggaaacgcgggtggaagcgacgctgattggc
cgatctatcgtcattaaagagctgcatcagcagatttatcaggcggcaaaacaccgtctt
tcggtgctgattcagggcgaaaccggttcagggaaagatgtggtcgcgcgtctgctgcat
cagtgttccgaacgtgccgacaagccctttattgccatcaactgcgcggcgatcccggaa
aatctgattgaaagcgagctgtttggttaccagaaaggcgcgttctccggcgcacaaagt
aacaagattggtctggtcgagcaggctaacggcggaaccctgtttttggatgaagtcggc
gatatgccgcagtccatgcaggccaagctgttaagggtgctggaaacgcatagcttccgt
cccctcggtgcggagaaagaagtgcattccgatttccgcctgattgccgcgacccatcag
ccgctggaacagcaggtgtctgacggcgtatttcggcaggatctctatcatcgcctttgt
cagtgcctgttgcaggtcgccccgctgcgcgagcggccggacgatattcgtctgctgtgc
gagcacttcatcggtcaatttgcagataaacagcaaaagcacgttgggccattgaaccgt
gctttcctgcgccaactggtggcgtatgactttcccggcaatgtgcgggaactgcgcaat
ctgctggaagtcgcctgcgcgcatacgccggacggtgaggcgctgtctctggcatcgctg
ccgccggaactgcgcgagcggctgaccagcagcccgcctgaagaacaggatcgctatcag
cacatccacgatttgcgtattgccacacagcgctatgaagcggctgtcattgaggcacgc
ctgcgccagtttcagggcaaccgcctgctggtggccgatagcctcaatatccctaaacgc
actctcgaccacaaatgccagaagctggaggtaaattga
DBGET
integrated database retrieval system
