Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_038510
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Entry
PCC21_038510 CDS
T02320
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc00040
Pentose and glucuronate interconversions
pcc01100
Metabolic pathways
pcc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PCC21_038510
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PCC21_038510
Enzymes [BR:
pcc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PCC21_038510
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AFR05254
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Position
4355754..4356881
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AA seq
375 aa
AA seq
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MKYLLPTAAAGLLLLAAQPAMAANTGGYATTDGGDVSGAVKKTARSMKEIVDIIEAAQVD
SKGKKVKGGAYPLFITYNGNEDSLIKAAEKNICGQWSKDARGVQIKEFTKGITIQGTNGS
SANFGVWIVNSSNVVVRNMRFGYMPGGAQDGDAIRIDNSPNVWIDHNEIFAKNFECAGTP
DNDTTFESAVDIKKGSTNVTVSYNYIHGIKKVGLSGSSSSDTTARNLTYHHNIYRDVNSR
LPLQRGGLVHAYNNLYDGITGSGFNVRQKGKALIESNWFENALNPVTARNDSSNFGTWEL
RNNNVMSPADFAKYKITWGKPSSPHINADDWKTTGKFPTVSYKYTPVSAQCVKDKLANYA
GVGKNLAVLTAANCK
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacctattgcctacggcagccgcgggattgttattactcgcagctcaacccgcg
atggccgcaaatacgggcggctatgccactacggatggtggcgacgtatccggtgccgtg
aaaaaaacggcacgttctatgaaagaaattgtggatattattgaagccgcgcaagtggat
tcaaaaggcaagaaagtcaaaggcggtgcttacccgctcttcatcacctataacggcaat
gaagattcattaatcaaagcggctgaaaagaatatctgcggccagtggagtaaggacgcc
cgcggcgtacaaatcaaagagttcaccaaaggcattactatccagggcaccaatggctca
tctgccaacttcggtgtttggatcgtgaattcttctaacgtcgtggtacgtaacatgcgc
tttggctatatgccgggcggcgcgcaagacggcgatgccattcgtatcgataactcaccg
aacgtctggatcgaccacaacgagatcttcgccaagaacttcgaatgcgccggtacgcca
gacaatgacaccacctttgaatcagcggttgatatcaagaaagggtcaacgaacgtcacg
gtgtcctacaactacatccacggcatcaagaaagtcggcctgagcggttcaagtagttcg
gatacaacggctcgtaacctgacttaccatcacaatatctatcgcgatgttaactcacgc
ctgccgctgcaacgtggtggtctggttcacgcgtacaacaacctgtatgacggcatcact
ggttcaggctttaacgtccgtcagaaagggaaagccctcatcgaaagcaactggttcgaa
aatgcgctgaacccagtgacggcacgtaacgacagctccaactttggtacctgggagctg
cgtaataacaacgtcatgagcccagccgacttcgcgaaatacaaaattacctggggcaaa
ccgtcctcccctcacatcaatgcggatgactggaagaccacaggaaaattccctaccgtc
tcctataagtacactccagtttctgcgcagtgtgtgaaggataaactggcaaactatgct
ggcgtaggtaaaaacctggcagtactgacagcagctaactgcaaataa
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