Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_039920
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Entry
PCC21_039920 CDS
T02320
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC21_039920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcc03019
]
PCC21_039920
Enzymes [BR:
pcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCC21_039920
Messenger RNA biogenesis [BR:
pcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC21_039920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFR05395
UniProt:
A0AA86DGL0
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All DBs
Position
4523297..4524586
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AA seq
429 aa
AA seq
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MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPATAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA
CEEYALNLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNAPRRSGA
PRNNRKRAD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
attgaagctcttgaaagtaaagggtttcataactgtacgcctattcaggcgttagctctg
ccattggctctgtcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaagacg
ctggcttttctcgcgtctactttccattatctgctttcacaccctgcaaacgcagagcgt
cagaccaatcagccacgtgccttaattatggcaccaactcgtgaactggctgtccagatt
cactctgatgcagaagcgctgtctcatgcaactgggctaaaattaggtttagcctacggt
ggcgacggctacgacaaacagcttaaagtgctggaaagcggcgttgatattctgatcggc
accaccggtcgtctgatcgattatgccaagcagaaccacatcaatctgggcgcgattcag
gtcgtcgtgctggacgaagcagatcgcatgtacgatctcggcttcattaaagacattcgc
tggctattccgccgcatgcccgcaacggcacagcgcctgaacatgctcttctccgctacg
ctctcctaccgggtgcgtgaactcgcgtttgaacagatgaataacgccgagtatgtggaa
gttgaaccggaacagaaaaccggccaccgcattaaagaagaactgttttatccatccaac
gaagaaaaaatgcgcctgctccagacactgctggaagaagagtggccggaccgctgcatt
atttttgcgaataccaaacatcgctgtgaagacatctggggccatctggctgccgatggc
catcgcgttgggctgctgacgggcgacgtcgcacagaaaaaacgtctgcgtattctggaa
gaatttacccaaggtaatctggatattctggtggcaacggacgttgcagcacgcggtttg
catattccttctgtgacccacgtttttaactacgatctgccggatgactgcgaagactac
gttcaccgtattggccgtacgggccgtgcggggcagagtggattctctatcagtctggcc
tgtgaagagtacgcgctgaaccttccggctatcgaaacctatatcggtcacggaatccca
gtcagcaaatacaacagtgacgcgctgatgaatgatttaccagcgccgaagcgtttaaca
cgtccaccgcgttccaataatggcccgcgccgacacaatgcgccacgccgcagcggagcg
ccccgtaataaccgtaaacgagcggactaa
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