Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_042020
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Entry
PCC21_042020 CDS
T02320
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcc03032
]
PCC21_042020
03400 DNA repair and recombination proteins [BR:
pcc03400
]
PCC21_042020
Enzymes [BR:
pcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PCC21_042020
DNA replication proteins [BR:
pcc03032
]
Prokaryotic type
DNA Topoisomerases
PCC21_042020
DNA repair and recombination proteins [BR:
pcc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PCC21_042020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
AFR05605
LinkDB
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Position
complement(4769020..4771437)
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AA seq
805 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDII
ITIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGETNRTGTTVRFWPSHETFTNVV
EFEYEILAKRLRELSFLNSGVSIRLIDEREKDKADHYHYDGGIKAFVDYLNRNKTPIHPN
VFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMDK
EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLVD
YLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALSE
LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVKK
GKQEQYIKDDEAMDQYQIALALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKMIGRMER
RFPRAFLNRLIYQPTLAEADLGEREKVQAWAESLVSSLNENEIHGSTYSFVIHHDEERSV
FEPALRVRTHGVDTDYPLGAGFVAGSEYRKLNQLGEKLRGLIEEDAYIERGERRQPVASF
EQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFTT
LMGDAVEPRRAFIEENALKAMNIDI
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattgaaagggctggatgcggtacgt
aaacgcccaggtatgtatatcggcgatacggacgacggtactggcctgcatcacatggta
ttcgaggttgtggacaacgctatcgacgaagcactcgctggctattgtaaagacattatc
atcaccatccatgctgataactcggtatcggtgcaggatgatggccgtggtattccgacc
ggcattcacgaagaagaaggtatctccgcggctgaagtcatcatgaccgtgctgcacgcg
ggcggtaagttcgatgataactcgtataaagtctctggcggtctgcacggcgtaggggtt
tccgtggttaacgccctgtcggaaaaactgaaactggttatccaccgcgacgggaaactt
cacgagcaaacctataaacacggcgtggcgcaggctccgctggctgttacgggtgaaacc
aacagaaccggtacgacggtgcgcttctggccgagccatgagacgttcaccaacgtggtg
gaattcgagtatgagattctggccaagcgtctgcgcgagctgtcgttcctgaactccggt
gtctccatccgcttgatcgacgagcgtgagaaagataaagccgatcattaccattatgac
ggcggcatcaaggcgtttgttgattacctgaaccgtaacaagacgccaattcacccgaac
gtgttttatttctcgacggtgaaagatgacatcggcgtggaagtggcattgcagtggaac
gatggtttccaggaaaacatttactgctttaccaacaacattccacagcgcgacggtggt
acgcacctggccggtttccgtgccgcgatgacccgtacgctgaatacctacatggataaa
gaaggctacagcaagaaagccaaagtcagcgccaccggtgacgatgcgcgtgaagggctg
atcgccgtcgtttccgtgaaagtgccggatccgaaattctcctcgcagaccaaagacaag
ctggtttcttccgaagtgaaaacggcggttgaatcgctgatgaacgagaagctggtggat
tatctgatggaaaacccgtcagacgccaaaatcgtggtcggtaaaattattgatgccgca
cgtgcccgtgaagcggcgcgtaaagcgcgtgatatgacgcgtcgtaaaggtgcgctcgat
ctggctggcctgccgggcaaactggcggactgtcaggaacgtgaccctgcgctgtctgaa
ctgtacctggtggaaggggactcagcgggcggctctgccaagcaggggcgtaaccgtaag
aaccaggcgattctgccgctgaaaggtaaaatcctgaacgttgagaaagcccgttttgac
aagatgctttcctcacaggaagtcgcgacgctgatcaccgcgctgggctgcggcattggc
cgtgatgaatataacccggacaaactgcgctaccacaacatcatcatcatgaccgatgct
gacgtggatggttcgcacatccgtaccctgttgttgaccttcttctatcgtcaactgcct
gaaatcgttgagcgtggtcacgtgtatattgcgcagccgccgctgtacaaggtgaaaaaa
ggcaagcaggaacagtacatcaaagatgatgaagcgatggaccagtaccagatcgcactg
gcgctagacggcgcgacgctgcacaccaatgcacaggctcctgcgctggcgggtgaaccg
ctggagaaactggtttctgaacattacgccgtacagaagatgattggccgtatggagcgt
cgcttcccgcgtgcgttcttgaaccgcctgatctatcaaccaacattggctgaagccgat
ttgggcgagcgtgaaaaagtacaggcgtgggcggaatcgctggttagtagcctgaacgaa
aacgagattcacggcagcacatacagctttgtcattcatcatgatgaagagcgcagcgta
tttgaaccggcgctgcgcgtgcgtacgcacggtgtggataccgattatccgctgggcgca
ggcttcgtggcgggtagcgaataccgcaaattgaatcagctgggtgaaaaattgcgcggc
ctgattgaagaagatgcgtacatcgaacgtggtgagcgtcgtcaaccggttgccagcttt
gagcaggcattggagtggctggtgaaagagtcccgccgtggcttgaccgtacagcgctat
aaaggtctgggtgaaatgaacccggatcagctgtgggaaaccacgatggatccgaccagc
cgccgcatgctgcgcgtgacggtgaaagacgccattgctgccgatgagctgttcaccacg
ctgatgggcgatgcggtagaaccacgccgtgcatttatcgaagagaacgccctgaaagca
atgaatatcgatatctga
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