Mixta calida: C2E16_00560
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Entry
C2E16_00560 CDS
T05419
Symbol
fliA
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
pcd
Mixta calida
Pathway
pcd02020
Two-component system
pcd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C2E16_00560 (fliA)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C2E16_00560 (fliA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcd03021
]
C2E16_00560 (fliA)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pcd02035
]
C2E16_00560 (fliA)
Transcription machinery [BR:
pcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C2E16_00560 (fliA)
Bacterial motility proteins [BR:
pcd02035
]
Flagellar system
Flagellar assembly proteins
Stator
C2E16_00560 (fliA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_37
UPF0122
MarR_2
PhyR_sigma-like
Peptidase_C26
Motif
Other DBs
NCBI-ProteinID:
AUY27029
UniProt:
A0ABM6S592
LinkDB
All DBs
Position
120554..121276
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AA seq
240 aa
AA seq
DB search
MNGLYTPEGMVDKNALWKKYAYLVRHEALRLQVRLPGSVELDDLVQAGAIALLNAIDHYD
PKKGIVFSTYITQRIRWALIDELRERDWVPRRIRSNAREIAAVIRRIEQRTGQPAKEADV
AAEMNITLEEYQQMLTDTNVSQICSLDELMEEMADRFEQPDAQHEKLNPLNEATKIRLVS
QISDEIKALPEREQTLLNLYYQQELNMKEVGQILGITETRVSQLHSQAIKRLRSRLQLAS
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
gtgaatggattatatacccctgagggtatggttgataaaaatgcgctatggaaaaaatat
gcttatctggtccggcacgaagctttacggcttcaggtaagacttcccggcagcgtagag
cttgacgatttggtgcaggctggcgctatcgcccttctcaatgccatcgatcattatgac
ccgaaaaagggcattgtcttcagcacctatattacgcagcgtattcgctgggctctgatt
gatgagcttcgcgaacgcgactgggtgccgcgccgcattcgcagcaatgcccgagagatc
gcggcggttatccggcgtattgaacagagaactggccaaccggcaaaagaggccgacgtc
gcggcggaaatgaacattacgctggaagagtaccagcagatgttgaccgacactaatgtc
agccagatctgttcccttgatgaattaatggaagagatggcggatcggtttgaacagccc
gatgcgcagcatgaaaaactcaatccgcttaatgaagccaccaagataagactggtgagt
caaatcagcgatgagataaaagcgctgcctgaaagagagcaaacattactgaatctctat
tatcaacaagaattgaacatgaaagaagtcggccaaatattggggataacggaaactcgc
gtcagccaattacacagccaggcgattaagcgtttacgctcgcgtttgcaactggccagt
taa
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