Mixta calida: C2E16_02260
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Entry
C2E16_02260 CDS
T05419
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcd
Mixta calida
Pathway
pcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2E16_02260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcd03021
]
C2E16_02260
03400 DNA repair and recombination proteins [BR:
pcd03400
]
C2E16_02260
Enzymes [BR:
pcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2E16_02260
Transcription machinery [BR:
pcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2E16_02260
DNA repair and recombination proteins [BR:
pcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2E16_02260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AUY23855
UniProt:
A0ABM6RWV9
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All DBs
Position
487900..488889
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQLSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIITLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASINMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
DRIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaattgagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggccatactcttggt
aacgcactgcgccgtattctgctgtcatccatgccgggttgcgcggtgaccgaggttgag
attgatggtgtacttcatgagtacagcaccaaagagggcgtacaggaagatatcctggaa
atcctgcttaacctgaaagggctggcggtaagagttcagggtaaagatgaagtcatcatt
actctgaataaatctggcattggccctgtgactgcagccgacatcacccatgatggtgat
gtcgaaatcgtcaagccgcagcacgtgatctgccatctgaccgatgaaaacgcatctatt
aatatgcgcatcaaagttcagcgtggccgtggttatgtgccggcttctgcccgaattcat
tcggaagaagatgagcgcccaatcggccgtctgttggtcgacgcctgctatagccctgta
gaccgtatcgcctacaatgttgaagctgcgcgtgtagaacagcgtaccgacctggataag
ctggtcatcgagatggaaaccaacggcactatcgatcctgaagaggcgattcgtcgtgcg
gctaccattctggctgaacaactggaagctttcgttgacctgcgtgacgtacgtcagccg
gaagttaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgagctacttaaaacgcctaacctgggtaagaaatctctt
actgagattaaagacgtgctggcttcacgtggtctttctctgggcatgcgcctggaaaat
tggccgccggcaagcattgctgatgaataa
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