Mixta calida: C2E16_02835
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Entry
C2E16_02835 CDS
T05419
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcd
Mixta calida
Pathway
pcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2E16_02835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcd03019
]
C2E16_02835
03009 Ribosome biogenesis [BR:
pcd03009
]
C2E16_02835
Enzymes [BR:
pcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2E16_02835
Messenger RNA biogenesis [BR:
pcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2E16_02835
Ribosome biogenesis [BR:
pcd03009
]
Prokaryotic type
rRNA helicases
C2E16_02835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUY23952
LinkDB
All DBs
Position
599516..601441
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AA seq
641 aa
AA seq
DB search
MTDIQTTFSDLGLNESILTALNDMGYEKPSPIQAACIPHLLEGRDVLGMAQTGSGKTAAF
SLPLLNNIDSELKAPQILVLAPTRELAVQVAEACNDFSKHMRGVNVLALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVWGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSARRLEKFAAKVQQQLESSDLEQYRALLSQLSPESDLDMETL
AAALLKMAQGERPLILPPDAPRPQRREFRERDDRRDDRRGSREMRGESREGGERPRRERR
DVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEI
LQHFTRTRILNKPMNMQLLGDAQPRERGEQRADRGGERRGGGRGSFGGERREGGREGGRR
FSERREGGRSGSFSREGGNSRGPRREEGAGAGAGAVRRRDY
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaaccactttttccgacctgggtcttaacgaatctatcctcaccgct
ctgaatgacatgggctatgagaagccgtctccgatccaggccgcctgtatcccgcatctg
ctggaaggccgcgatgtgctgggtatggcgcaaaccggtagtggcaaaaccgcagcgttc
tccttgccgctgctgaacaatatcgacagcgaattgaaagcgccgcagattctggttctg
gcgccgacgcgtgagctggcggttcaggttgcagaagcctgcaacgatttttctaaacat
atgcgcggcgtaaacgtgctggccctgtatggcggtcagcgttacgacgtgcagctgcgc
gcgctgcgtcagggaccgcaaatcgtggtcggtacgccgggtcgtctgcttgaccacctg
aaacgcggcacgctggatctttctaacctgcgcggcctggtgctggacgaagcggatgaa
atgctgcgcatgggctttatcgaagacgtagaaaccatcatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccggaagcgattcgtcgcattacgcgtcgt
tttatgaaagatccgcaggaagtgcgcatccagagcagcatcactacgcgtcctgacatc
agccagagctactggaccgtctggggccgtaaaacggatgcgctggtgcgtttcctggaa
gctgaagactttgatgcggcgatcatcttcgttcgcaccaaaaacgcgacgctggaagtg
gctgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggcgacatgaaccag
gcgctgcgtgagcagactctggagcgtctgaaagatggccgtctggatattctgatcgcg
actgacgttgcggcacgtggtcttgacgtggagcgtattagcctggtggttaactacgac
atcccgatggactcagaatcctacgttcaccgtatcggtcgtaccggtcgtgctggccgc
gccggtcgcgcgctgctgttcgtggaaaaccgcgaacgtcgtctgctgcgcaatattgag
cgcaccatgaagctgaccatcccggaagtcgagctgccgaacgcagaactgctgagcgcc
cgtcgtctggagaaattcgccgctaaagtacagcagcagctggaaagcagcgatctggag
caataccgcgcgctgctgagccagctgtcgccggagagcgatctggatatggaaacgctg
gcggccgcgctgctgaaaatggcgcagggcgaacgcccgctgattctgccgccggatgcg
ccgcgtcctcagcgtcgtgaattccgcgagcgtgatgaccgtcgtgacgatcgtcgcggc
agccgtgaaatgcgtggcgagagccgtgaaggcggcgaacgtccgcgtcgcgagcgtcgt
gacgttggcgacatggagctgtatcgtatcgaagtgggccgtgacgatggcgttgaagta
cgtcatatcgtgggcgctatcgccaacgaaggcgatatcagcagccgttacatcggtaac
atcaagctgttcggcactcactcaacgatcgaactgccgaaaggcatgccgggcgaaatc
ctgcagcacttcacccgtacgcgtattctcaacaaaccgatgaatatgcagctgctgggc
gatgcgcaaccgcgtgagcgtggcgaacaacgtgccgatcgcggcggtgagcgtcgtggc
ggcggtcgcggcagctttggcggcgaacgtcgcgaaggtggccgtgaaggcggtcgtcgt
ttcagcgagcgtcgtgaaggcggccgcagcggcagcttcagtcgtgaaggcggcaacagc
cgtggtccgcgtcgtgaagaaggtgctggcgcaggcgccggtgcagtgcgccgtcgcgat
tactaa
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