Mixta calida: C2E16_04100
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Entry
C2E16_04100 CDS
T05419
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pcd
Mixta calida
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcd03021
]
C2E16_04100
Transcription machinery [BR:
pcd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
C2E16_04100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUY24172
LinkDB
All DBs
Position
complement(866971..869874)
Genome browser
AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPATGENRLYARNDSPITRVIFNPGDT
VTSHEGWQLEVAEVRNDNGLVTYIGTRLDTQEPMEMREVLLDSKLVFSKPQDRLFAGQLD
RMDRFALRFRARRYQSEQYRLSVSGLRGMRTNLIPHQLHIAHDVGRRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRADRVLIVVPETLQHQWLVEMLRRFNLRFSLFDDARYAEAQHD
SDNPFDTEQLVICSLDFVRRNKQRLQQLADAEWDLLVVDEAHHLAWSEGEPSREYQVIEQ
LAEQIPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFEQFVAEQENYRPVADAVAMLLE
DKSITSAEMNLLSDLIGEQDIEPLLQTANGKSDGRQAAREELIRMLMDRHGTSRVLFRNT
RNGVKGFPHRELHQIRLPLPTQYQTAIKVSGIMAARKSAEERAHDMLYPEQIYQEFEGDS
GTWWNFDPRVEWLMGYLTSNRKEKVLVICAKAATALQLEQVLREREGIRAAVFHEGLSII
DRDRAAAWFASEEDGAQVLLCSEIGSEGRNFQFANRLVMFDLPFNPDLLEQRIGRLDRIG
QTRDIQIMVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDRVHDQLIGYLAAPENSE
GLDAFIAECRQQHDALRAQLEQGRDRLLELHSNGGEKAQALAEEISRQDNNIELVNFALN
LFDIIGINQEDRSDNLIVLTPSDHMLVPDFPGLPEEGCTITFDRDQALAREDAQYVTWEH
PIIRNGLDLILSGDTGSCALSLLKNKALPVGTLLIELIYVVEAQAPKHLQLTRFLPPTPV
RLLVDRKGVNLADKVEFESFNRQLNAVNRHNGSKLVNAVQQDVHAILQLAEPQAAEAARK
LIDAARAEADEKLSAELERLEALKAVNPNIREDEIAALESNRSEVLASLNDAGWRLDALR
LIVVSHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacggaaagcgaactgggactggga
actgtggttgccctggatgcccgtatggttactctgctttttcctgctaccggtgaaaac
cgtctctatgcccgaaatgattctcccattacccgtgtgatcttcaatcccggcgatacc
gtcaccagccatgaaggctggcagctggaagtcgctgaagtacgcaatgataatggcctg
gtaacctatatcggcacccgtctggatactcaggagccgatggaaatgcgcgaagtgctg
ctcgacagcaaactggtgttcagcaagccacaggaccgtctgttcgccggtcagcttgac
cgcatggatcgcttcgccctgcgctttcgcgcgcgccgttaccagagcgagcagtatcgt
ctctctgtcagcggtctgcgcggcatgcgcaccaacctgatcccgcaccagctgcatatc
gcccacgatgtgggccgccgtcacgcgccgcgcgtgctgctggcggatgaggtgggcctc
ggcaaaactatcgaagccgggatgattattcatcagcagctgctggccggccgcgccgat
cgcgtgctgatcgttgtgccggaaactctgcagcatcagtggctggtggaaatgctgcgt
cgctttaacctgcgtttctcgctgtttgacgacgcgcgctacgccgaagcgcagcacgac
agcgacaatccgttcgataccgagcaactggtgatttgctcgctcgatttcgtgcgtcgc
aacaaacagcgtttacagcagctggcggacgcggagtgggatctgctggtcgtagacgaa
gcgcatcatctcgcctggagcgaaggcgagccgagccgcgaatatcaggttatcgaacag
ttggcggagcagatccccggcgtgctgctgttgacggcgacgccggagcagctcggcatg
gagagccacttcgcgcgcctgcgcctgctcgatccggatcggttccacgattttgagcag
ttcgtcgccgagcaggagaattatcgcccggtcgccgatgcggtcgccatgctgctggaa
gacaaaagcatcaccagcgccgagatgaatctgctgagcgatcttatcggcgagcaggat
atcgaaccgctgctgcaaaccgccaacggcaagagcgacggcaggcaggcggcgcgcgaa
gagttgattcgcatgctgatggatcgtcacggcaccagccgcgtgctgttccgcaacacc
cgtaacggcgtgaagggcttcccgcatcgcgaactgcatcagatccgtctgccgctgccg
acgcagtatcagaccgcgatcaaggtttccggcatcatggcggcacgtaaatccgccgag
gagcgcgcgcacgatatgctctacccggagcagatttatcaggagtttgagggcgacagc
ggcacctggtggaacttcgatccgcgcgttgaatggctgatgggctatctgaccagcaac
cgcaaagaaaaagtgctggtgatctgcgccaaagcggcgaccgcgctacagctggagcag
gtgctgcgcgagcgtgaaggcattcgcgccgcggtattccatgaagggctgtcgattatc
gatcgcgaccgcgccgccgcctggttcgcttcggaagaggatggcgcgcaggtgctgctc
tgttcagaaatcggttccgaaggacgcaacttccagttcgccaaccggctggtaatgttc
gatctgccgttcaaccccgatctgctggagcagcgtatcggccgcctcgaccgtatcggt
cagacgcgcgatattcagatcatggtgccttatctggagaaaacagcgcagtcggtgctg
gtgcgctggtatcacgaagggctggatgcgttcgagcatacctgcccgacaggacgcacg
gtttacgatcgggtgcacgatcaattgatcggctatctggccgcgccggaaaacagcgaa
gggctggacgcgtttatcgctgaatgccgtcagcagcacgatgcgctgcgcgcgcagctg
gagcagggccgcgaccgtctgctggagctgcattccaacggcggcgagaaagcccaggcg
ctggcggaagagattagccgtcaggataacaatatcgagctggtcaacttcgcccttaac
ctgttcgatattatcggcatcaaccaggaagatcgcagcgataacctgattgtgctgacg
ccgtccgatcatatgctggtgcccgatttccccggcctgccggaagaaggctgcaccatc
accttcgatcgcgatcaggcgctggcgcgtgaagatgcgcagtatgtgacctgggaacac
ccgatcattcgcaacggtctcgatctgatcctgtcaggcgataccggcagctgtgccctt
tcactgttaaaaaacaaggcgctgccggtcggcacgctgctgatcgagctgatttacgtg
gtggaggcgcaggcgccgaaacatctgcaattgacccgctttctgccgccaacgccggtg
cgtctgctggtggatcgcaaaggcgtcaatctggccgacaaggtggaatttgagagcttt
aaccgtcagctgaacgcggtgaaccgccataacggcagcaagctggtgaacgcggtgcaa
caggatgtgcatgcgattttgcagctggcggagccgcaggcggcggaagcggcgcgtaag
ctgatcgacgcggcgcgcgccgaggcggatgaaaagctgagcgctgagctagagcgtctg
gaagcgctgaaggcggtgaacccaaatatccgtgaagatgagatcgccgcgctggagagc
aaccgcagcgaggtactggccagcctgaatgatgccggctggcgtctggacgcgctgcgc
ctgatcgtcgtctctcatcagtaa
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