Mixta calida: C2E16_05525
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Entry
C2E16_05525 CDS
T05419
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pcd
Mixta calida
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcd03400
]
C2E16_05525
DNA repair and recombination proteins [BR:
pcd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C2E16_05525
Archaeal homologous recombinant proteins
C2E16_05525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
AAA_21
nSTAND3
cobW
ABC_ATPase
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUY24423
LinkDB
All DBs
Position
complement(1181189..1184866)
Genome browser
AA seq
1225 aa
AA seq
DB search
MKILSLRFKNINSLKGEWKIDFTREPFASSGLFAITGPTGAGKTTLLDAICLALYHETSR
LGKISQTQNELISRDTAECLAEVEFEVKGEAWRAFWSQNRARGAVDGNLQAPRVELARCA
DNVIVADKVKDKLEMIAQLTGLDFARFTKSMMLSQGQFAAFLNADANDRAELLEELTGTE
IYGQLSARIYEQHKQARIELDQLRARAAGMALLEPAARQELEQALGALTQQEQELQKQLA
LTQQQHQWLSQQQRLTQETEQAADAQRQAESDWQQAEPARQQLARAEPAEKLRPLWQQRS
QLQQDLQQLAQQTQQLTAALKLESEQLLTMQQAQLLAEQENKRLNDQWRQQETLINDQVI
PLDHQIATLTQQLTLQQQNLEESQRTQQQREQRRRQLSDERQTLLSQQQQEQQWRRDHAG
VADWGERLGGWRERFQQQQQLRQNLTAMQEKQRQHQQQLNEQQQLSDRLASASTPLESEL
ERARQHAAQAEQALTALEEQQPESALRRQLEQQQRQRPLRQKLAICFSTLRPLSQRHTQQ
QQELLALDELIVQQTQQLEQRRQAWKEKHQHRIDLQKRLELEQRIVSLEQERARLIAGEP
CPLCGATEHPAVAHYQTLTLNENQQRLENVRQQEEQLRIEGVTCGEQLKALQSQQQRLMQ
QQQTLSAELTRQQDEWHTLLAAAELTLAPEDEAGLSAWIEQQERQESELQAQLQQREGAA
RLYQQAKEALAACQQRWQQQHQARQLAEQQLGYLRQQRQEAEQQQRQLSEQLALLDEALT
QELTQHQLTLPEPQAQQAWLEDRQEAWRRWQKSEQLLADIAARLAACDTALRGIDDELTQ
LAQQRERAEQLAQSQRRQLSELRQQRHQLLGDSAVSEVRQQWQQRLAQADALLRERQQRW
QQGQDRLNNLTGQHNSLAQQQEAAQKRYETCSAQFIDALTQSDFSDEEAFRAALLDEQQA
MQLRTRCQALEARRQQANAVAQQAQARLTQHLADRPADLSAALPELEARLEAQQQRLRDL
VRQQGQLRQQLESDDAQRQQQQALLQRIEDNAQQTEDWGYLNQLIGSSSGDKFRRFAQGL
TLDHLVWLANQQLNRLHGRYLLQRKSADTLELQVMDTWQADAKRDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDADTLDTALDALDALNASGKTIGVISHVDAMKE
RIPVQIKVRKVNGLGYSRLDRLFSV
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctttcgctgcgctttaaaaatatcaactcgctgaagggcgagtggaaaatc
gacttcacccgcgaaccgttcgccagcagcggcctgttcgccattaccggccccaccggc
gccggtaaaaccaccctgctcgacgccatctgcctggcgctctatcacgaaacctcgcgg
ctgggcaaaatctcgcaaacgcagaacgagctgatcagccgcgataccgctgaatgtctg
gccgaggtggaatttgaggtcaaaggcgaagcctggcgcgccttctggagtcagaaccgg
gcgcgcggcgcggtggacggcaacctgcaggcgccgcgcgtcgagctggctcgctgcgcg
gacaatgttatcgtcgccgacaaggttaaagataagctggagatgatcgcccagctaacc
ggactcgactttgcccgcttcaccaaatcgatgatgctgtcgcaggggcagttcgccgcg
tttctcaacgccgacgccaacgaccgcgccgaactgctggaggagctgaccggcaccgag
atctacggccagctttccgcgcgcatctatgaacagcacaagcaggcgcgcatcgagctg
gaccagttgcgcgcgcgggcggcgggcatggcgctgctggagccggcggcgcgtcaggaa
cttgagcaggcattaggcgcactgacgcagcaggaacaagagctgcaaaaacagttagcg
cttactcagcagcaacaccagtggctcagccagcagcagcgtctgactcaggaaacggag
caggccgccgacgctcagcgtcaggcggaaagcgactggcaacaggcggaaccggcgcgt
cagcagctggcgcgggcggaaccggcggaaaagctgcgtccgctctggcaacagcgcagc
cagctacagcaggatctgcaacagctggcgcagcaaacgcagcagctgactgccgcgctc
aaactcgaaagcgagcagttacttacaatgcaacaggcgcagttgctggccgaacaggag
aataaacggctcaacgaccagtggcgtcagcaggaaacgctgatcaacgaccaggtgatc
ccgctcgaccatcagatcgctaccctgacgcagcagctgacgctgcaacaacagaatctg
gaggaaagccagcgcacgcagcagcagcgcgagcagcgccgacgccagctcagcgacgaa
cggcagacgctgctttcgcagcagcagcaagagcaacagtggcgccgcgaccatgccgga
gtggcggactggggcgagcggctgggcggctggcgcgagcgttttcagcagcagcaacag
ctgcgacagaacctgacggcgatgcaggaaaaacagcgccagcatcagcagcagctgaat
gaacagcagcagctgtccgatcgactcgcttcagcgtcgacgccgctggaaagcgagctt
gaacgcgcgcgtcagcacgcggcacaggctgagcaagcgcttactgcgttagaagagcag
cagccggaaagcgcgctgcgccgtcagctggagcaacagcagcggcagcgaccgctacgg
caaaagctggcgatctgcttttccaccctgcgccctctcagccagcgtcatacgcaacag
cagcaggagctgctggcgctggatgaactaatcgtgcagcaaacgcagcagctggaacag
cgtcgccaggcgtggaaagagaagcaccagcaccggatcgacctgcaaaagcgcctggag
ctggagcagcgcatcgtcagtctggagcaggagcgcgcccgcctgatcgccggcgagccc
tgtccgctctgcggcgccaccgagcatccggcggtggcgcactatcaaaccctgacgctg
aacgagaatcagcagcggctggagaacgtgcgccagcaggaagagcagctgcgcatcgaa
ggcgtcacctgcggcgagcagctgaaggcgttgcaaagccagcagcagcggctgatgcag
caacagcagacgctgagcgccgaactgacgcgccagcaggatgagtggcatacgctgctg
gccgccgccgaactgacgctggcgccggaagacgaagcgggactcagcgcctggatcgaa
cagcaggaacggcaggagagcgagcttcaggcgcagctgcaacagcgcgaaggcgccgcg
cgcctttatcagcaggcgaaagaggcgctggcggcctgtcagcagcgctggcaacagcag
catcaggcgcgccagctggcggaacaacagctgggctatctgcgtcagcaacggcaggag
gcggaacagcagcagcggcagttaagcgaacagctggcgctgctggacgaagctctgacg
caggagctgacgcagcatcagctgacgctgccggagccgcaggcgcagcaggcctggctt
gaggatcgtcaggaggcgtggcggcgctggcagaaaagcgaacagctattggccgatatc
gccgcgcgccttgccgcctgcgacaccgcgctgcgcggcatcgatgacgaactgacgcag
ctggcgcaacagcgggaacgggcggaacagctggcgcagtcgcagcggcgacagctgagc
gagctgcgtcaacagcgtcatcagctgctgggcgacagcgcggtgtcggaggtgcgtcaa
cagtggcagcagcggctggcccaggccgacgcccttctccgcgaacggcagcagcgctgg
cagcagggacaggatcggttaaataacctgaccggacagcataattctctggcacaacag
caggaggcggcgcagaaacgctatgaaacgtgcagtgcgcagtttatcgacgcgttgacg
cagagcgatttcagcgatgaagaagcttttcgcgccgccctgctggatgaacagcaggcg
atgcagctacgcacccgctgtcaggcgctggaggcgcggcggcagcaggcgaacgcggtg
gcgcagcaggcgcaggcgcgactgacgcagcatcttgccgaccgtccggccgatcttagc
gccgcgctgccggagctggaggcacgactggaagcgcagcagcaacgactgcgtgacctt
gttcgtcagcaggggcagctgcgccagcagctggagagcgacgacgcgcagcgccagcag
cagcaggcgctgttgcagcgcattgaggataacgcgcagcagaccgaagactggggctac
ctgaatcagctgatcggctccagcagcggcgataagttccgccgcttcgcccaggggctg
acgctcgatcacctggtctggctggcgaaccagcaactgaatcgcctgcacggacgctat
ctgctgcaacgcaaatccgccgatacgctggagttgcaggtcatggatacctggcaggct
gacgcgaagcgcgatacccgcaccctgtcgggcggcgaaagttttctggtaagcctggcg
ctggcgctggcgctttcagatctggtgagccataaaacccgtatcgaatcgctgttcctg
gatgagggcttcggcacgctcgatgcggacacgctcgataccgcgctggacgccctggac
gcgctgaacgccagcggcaaaactatcggcgtaatcagccatgtcgacgcgatgaaagag
cgtatcccggtacagattaaagtcaggaaggtgaatggtctgggctacagccgactggac
cggttattttcagtctga
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integrated database retrieval system
