Mixta calida: C2E16_05530
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Entry
C2E16_05530 CDS
T05419
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pcd
Mixta calida
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcd03400
]
C2E16_05530
DNA repair and recombination proteins [BR:
pcd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C2E16_05530
Archaeal homologous recombinant proteins
C2E16_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
AUY24424
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All DBs
Position
complement(1184863..1186092)
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AA seq
409 aa
AA seq
DB search
MRIIHTSDWHLGQFFYTRSRAAEHQAFFNWLIDRVEEHQVDAVIVAGDIFDTGSPPSYAR
ELYNRFVVDLQRTGCQLIVLGGNHDSVATLNESRELLACLNAQVIAAASGNPEEQVLTLK
TRQGEPGAILCAIPYLRPRDIMRSQAGQSGEQKQLTLLSAITQHYQRSYQHARRLSEQAT
TPLPVIATGHLTTVGVSKSEAVRDIYIGTLDAFPAQAFPPADYIALGHIHRAQRIANSEH
IRYSGSPLPLSFDELGSEKSVFLVSFADGKLARVTPLPVPCFQPMQTIKGTLAEIEAQLK
PFADASPEQPVWLDIEITTQEYLHNMQQHIQALTEGLPVEVLLMRRSRELRERALARLQN
ETLSELKVEEVFERRLEQEEETDEARLQRVRQLFSGTLEALHHGEESQP
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattatccatacttcagactggcatctcggccagtttttctatacccgcagtcgg
gccgccgagcatcaggccttttttaactggctgatcgaccgcgtggaggagcatcaggtg
gatgcggtgatcgtggcgggcgatattttcgataccggctcgcctcccagctacgcgcgc
gaactctacaaccgtttcgtggtggatttgcaacgcaccggctgccagctgattgtgctg
ggcggcaaccatgactccgtcgccacccttaacgaatcgcgcgagctgctcgcctgtctg
aatgcgcaggtgatcgccgccgccagcggcaatcccgaagagcaagtgcttaccctgaaa
acgcgccagggcgagccgggcgctatcctctgcgccatcccctacctgcgcccgcgcgat
attatgcgcagccaggcgggccagtccggcgagcagaagcagctgacgctgctcagcgcc
atcacgcaacactatcagcgcagctatcagcatgcgcgcaggctgagcgaacaggcgacg
acgccgctgccggtgatcgccaccggtcatctcaccaccgtcggcgtcagtaagagcgaa
gcggtgcgcgatatctatatcggcacgctcgacgcctttcctgcgcaggcgtttccgccc
gccgactatatcgcgctgggtcatatccatcgtgcgcagcgcatcgccaacagcgagcat
attcgctacagcgggtcgccgctgccgctcagcttcgacgagctgggcagcgagaaaagc
gtctttctggtaagttttgccgacggcaaactggcgcgcgtcacgccgctgccggtgccc
tgcttccagccgatgcaaacgatcaaaggcacgctggcggaaatcgaggcgcagctgaag
ccgtttgccgacgccagcccggaacagccggtctggctcgatatcgaaatcaccacccaa
gagtacctgcacaatatgcagcagcatattcaggcgctgacggaaggactgccggtcgag
gtgctgctgatgcgccgcagtcgcgaactgcgcgaacgcgcgctggcgcgcctgcaaaac
gagacgctgagcgagctcaaggttgaagaggtgttcgagcggcggctggaacaggaggaa
gagaccgacgaggcgcggctacagcgcgtgcgtcagctattcagcggcacgctggaggcg
ctgcatcatggcgaggagagccagccatga
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