KEGG   Mixta calida: C2E16_09530
Entry
C2E16_09530       CDS       T05419                                 
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
pcd  Mixta calida
Pathway
pcd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pcd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C2E16_09530 (icmF)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pcd02044]
    C2E16_09530 (icmF)
Secretion system [BR:pcd02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C2E16_09530 (icmF)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related VP16-like
Other DBs
NCBI-ProteinID: AUY25118
LinkDB
Position
complement(2003138..2005252)
AA seq 704 aa
MKKVWPPLFASRLAWGFISISAFACLIWIVGPLLTIGNSRPLESVFNRQLAIGLGYFLWI
LLQLIPRLYNAWFNSRLLTNLQQQAALDPAEQQATENMLTDRFNEAMTLLKKTQFGRRRG
GRLQRYSAPWIYQLPWYVIVGAPGAGKTTALLNSGLEFPLTDSLGKSAVRGIGGTRHCDW
WFTDRAVLLDTAGRYTLQESQRARDASEWQTFIALLKRYRARQPVNGVIMTISVADLLSD
APEARYAQATALRQRMQELHQHTGIQFPVYIMVTKTDLLKGFMGYFATLDKQQRDRIWGF
TFPWEPGREANQPLNAHFEQQFTLLQQQLQRDVAHRMDQQNDLVQRADCFLFPQEFASLR
PLLAEYLEIVFAPVGGAVGWSPRGLFFTSGTQEGLPFDRIMGQLTRKLQLPRTGEHSIAA
WDSVNRAAPIPGNKGQSYFIRHLLSDLIFEESGLAGSDSRWEERNRLLHWFSYGTMAAAL
VLACGFWFTSYYQNQHYLQQIAERVPPLTRQGAELARQNTGTIFDLLPYLNSLVNLPQVE
SFSLDNPPLSMRAGLYRGDQVSDAAWVLYQNALKSLLLPRVAQEITRILGSDKGGDSEFS
RNALRAYQMLYQPRNYDGEFLRGWLMQNLQRTLPASVTTHDLQQLDWHLSQLLDRQIQSS
PFARDNALMMRKLAASLADSGRDGNRFAAAEAPTSSGGQSVSVR
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgaagaaggtttggcccccgctgttcgccagccgtctggcctggggatttatcagcatc
agcgccttcgcctgcctgatctggattgtcggcccattgctgaccatcggcaacagccgt
ccgctggagtcggtgtttaaccgccagctggcgatcggtctcggctatttcctgtggata
ctgctgcaactgataccgcggctttataacgcctggtttaatagtcgccttttgaccaac
ctgcaacagcaggcggcgctcgatccggcagagcagcaggccacggaaaatatgctgacc
gatcgctttaacgaagcgatgacgctgctgaaaaaaacgcagttcggccgccgtcgcggc
ggacgcttacagcgctacagcgccccctggatctatcaacttccctggtatgtgatcgtc
ggcgcgccgggcgccggtaaaaccaccgccctgctcaactccgggctggagttcccgctg
accgacagcctcggcaaaagcgccgtgcgcggcattggcggcacgcgccattgcgactgg
tggtttaccgaccgcgcggtgctgctggataccgcaggacgctatacgttgcaggagagc
cagcgcgcccgcgacgccagcgaatggcaaacctttatcgctctgttgaagcgctatcgc
gcgcgtcagccggtcaatggcgtgatcatgaccatcagcgtcgccgatctgctcagcgac
gcgccggaggcgcgctacgcccaggccaccgcgctgcggcagcgcatgcaggagctgcac
cagcacaccggaattcaattcccggtctatatcatggtgaccaaaaccgacctgctgaaa
ggctttatgggctatttcgccacgctggataagcagcagcgcgaccgcatctggggtttt
actttcccctgggagccgggacgcgaagccaaccagccgctgaacgcccattttgaacag
cagttcaccctgttgcagcagcaattgcagcgcgacgtggcgcaccgcatggaccagcag
aacgatttagtgcagcgcgccgactgcttcctctttccacaggagttcgcctcgctgcgt
ccgctgctggcggaatatcttgagatcgtcttcgcgccggtcggcggcgcggtcggctgg
tcgccgcgcggcctgttcttcaccagcggcacgcaggaaggcctgccgttcgatcgcatc
atgggtcagctgacgcgcaagctgcaactgccgcgcaccggcgagcactccatcgccgcc
tgggacagcgttaatcgcgccgcgccaatccccggcaacaagggacagagctactttatt
cgccatctgctgagcgatttgatttttgaagagagcggcctggcgggcagcgacagccgc
tgggaagagcgcaatcgcctgctgcactggttcagctacggcacgatggccgctgcgctg
gtgctggcctgcggcttctggttcaccagttattatcaaaaccagcactatttacagcag
attgccgaacgtgttccaccgttgacgcgccagggggcggaacttgcccggcaaaacacc
ggcaccattttcgatctgctaccctatctgaacagcctggtgaatttgccgcaggtggag
agcttttcgctcgacaatccgccgctcagcatgcgcgccgggctttaccgcggcgatcag
gtgagcgacgccgcctgggtgctgtatcagaatgcgctgaaatcgctgctgctgccgcgc
gtggcacaggaaatcacgcgcattctgggcagcgataagggcggcgacagcgaattcagc
cgcaatgcgctgcgcgcctaccagatgctctatcagccgcgcaactatgatggcgaattc
ctgcgcggctggctgatgcaaaacttacagcggaccctgcctgccagcgtcaccacgcac
gatctgcagcagcttgactggcatctcagccagctgttggatcgccagattcagtcgtcg
cctttcgcacgcgacaatgcgttgatgatgcgcaagctggccgccagcctggccgattcg
ggccgtgacggcaacaggtttgcggccgccgaggcgccgacctccagcggcggacaatcg
gtatcagtgaggtaa

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