Mixta calida: C2E16_15865
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Entry
C2E16_15865 CDS
T05419
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pcd
Mixta calida
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcd03009
]
C2E16_15865
Enzymes [BR:
pcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2E16_15865
Ribosome biogenesis [BR:
pcd03009
]
Prokaryotic type
rRNA helicases
C2E16_15865
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUY26235
LinkDB
All DBs
Position
3343772..3345112
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AA seq
446 aa
AA seq
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MTASTFSELELDESLLDALQDKGFSRPTAIQAEAIPAALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRVLILTPTRELAMQVAEQAQALAKHTQLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIETIAGETRW
RKQTMLFSATLEGDGIKDFAERLLNEPVEIDSDPSRRERKKIQQWYYRADDVAHKTKLLV
HLLKQPDVSRSIVFVRKRERVHELVGWLREAGINASYLEGEMVQAKRNEALKRLMDGRVN
VLVATDVAARGIDVDDVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTALSLVEAHDYLLL
DKISRYISEPLKARTIDELRPVTRAPSQKLKGKPSKKVLAKRKEKEKKKEDENKPRVKVR
HRDRKNIGKRRKPAADSASSNKENAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaagcacattttccgaactcgaacttgatgaaagcctgctggacgcattgcag
gacaaaggcttttcccgccccaccgctatccaggccgaagcgatccccgccgcgctggat
ggacgcgacgtgctgggttcagcaccaaccgggaccgggaaaacggcggcctatcttttg
ccggcgctacagcacctgctggattttcctcgtaaaaaatctggcccgccacgggttctg
atcctgacgccaacgcgtgagctggcgatgcaggtcgcagagcaggcccaggcgctggcg
aaacatactcagctggacatcgccaccattaccggcggcgtggcctatatgaatcatgcc
gaagtgttcagcgaaaaccaggatgtggtggtggcgaccacggggcgcctgttgcagtac
atcaaagaagaaaacttcgactgccgggcggtagaaattctgatcctcgatgaagcggat
cgcatgctggatatgggctttgcccaggatatcgaaaccatcgccggggagacccgctgg
cgtaagcagacgatgcttttctccgccacgctggaaggcgacggcattaaagacttcgcc
gagcgcctgttgaatgagcctgtggagatcgattccgatccgtcgcgtcgcgagcgcaag
aagatccagcagtggtattaccgcgccgacgacgtggcgcataaaaccaaactgctggtg
catctgctgaagcagccggatgtatcacgctctatcgtctttgtgcgcaagcgcgagcgc
gtgcatgagctggtgggctggctgcgcgaagcgggtatcaacgccagctatctggaaggc
gaaatggtgcaggcgaagcgtaacgaagcgctgaagcgtctgatggatggtcgcgttaac
gtgctggtcgctaccgacgtcgccgcacgcggcatcgatgtggatgatgtcagtcacgta
ttcaacttcgacctgccgcgtaccgcggatgtctatctgcatcgcatcggccgcacgggc
cgcgccggtcgcaaaggcaccgcgctgtcgctggtagaagcgcacgattatctgctgttg
gataaaatcagccgctatatcagcgagccgttgaaagcgcgtacgattgatgagctgcgt
ccggtaacgcgcgcgccaagccaaaaacttaaaggcaagccgtcgaagaaagtgctggcg
aagcgcaaagagaaagagaagaaaaaagaagacgagaataagccgcgcgttaaggtacgc
catcgcgaccggaaaaatatcggtaagcgacgcaagcctgccgccgacagcgccagcagc
aacaaagaaaacgctgaataa
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