Mixta calida: C2E16_17880
Help
Entry
C2E16_17880 CDS
T05419
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcd
Mixta calida
Pathway
pcd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C2E16_17880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcd03021
]
C2E16_17880
Transcription machinery [BR:
pcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C2E16_17880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
DNA_ligase_A_N
HAP1_N
PAC1
Motif
Other DBs
NCBI-ProteinID:
AUY26588
UniProt:
A0ABN5HG27
LinkDB
All DBs
Position
3753662..3755506
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSADTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELSEEERADEDDEDEDDDSDSSDDDNSIDPELAREKFIELRDQYEATRLTIKAKG
RSHADAIEEIQKLSEVFKQFRLVPKQFDYLVNNMREMMERVRTQERIIMKLCVELCKMPK
KNFITLFTGNETSPTWFQAALAMNKPWSEKLRDVEEDVQRSMQKLMQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctgcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaacgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgatcaacgacatgggtattcaggtggtggaagaagcgcct
gatgccgatgatctgatgctgaacgaaaacagcgctgacacggacgaagatgcggctgaa
gcggcagctcaggtgttatccagcgtagaatctgaaattggacgcacaaccgatcctgtc
cgcatgtacatgcgtgagatgggcaccgtcgaactgctgacgcgcgaaggcgaaatcgac
atcgccaagcgtatcgaagacggcattaaccaggtgcagtgttccgtcgccgagtacccg
gaagcgatcacttatctgctggagcagtacgatcgcgttgaggcaggcgagtcacgcctg
tcagatctgattaccggcttcgtcgatcctaacgccgaagaagatctggcgccgactgct
acccacgttggctctgaactgtcagaagaagagcgcgccgatgaagatgacgaagatgaa
gacgacgacagcgacagcagcgatgacgacaacagcatcgatcctgaactggcgcgtgaa
aaattcatcgagctgcgcgatcagtatgaagcgacgcgcctgacgatcaaggcgaaaggc
cgcagtcacgccgacgcgattgaagagatccagaaactgtcggaagtgtttaagcagttc
cgtctggtgccgaagcagtttgactatctggtcaacaacatgcgtgaaatgatggagcgc
gtacgtacgcaagagcgcatcatcatgaaactgtgtgtcgaactgtgcaagatgccgaag
aaaaacttcattaccctgtttaccggtaatgagaccagcccaacctggttccaggcggcg
ctggcgatgaacaaaccctggtctgaaaaactgcgcgacgtggaagaagatgtgcagcgc
agcatgcagaaactgatgcagatcgaggaagagaccggcctgacgattgaacaggtaaaa
gatatcaaccgtcgtatgtcgatcggcgaggcgaaagcgcgtcgtgcgaagaaagagatg
gtggaagcgaacctgcgtctggtgatttcaatcgccaagaaatacaccaaccgcggcctg
caattcctggatctgattcaggaaggcaacatcggcctgatgaaggcggtagataagttc
gaataccgtcgcggctacaagttctccacctatgcgacctggtggattcgtcaggcgatt
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagacg
atcaacaaactcaaccgtatttcgcgtcagatgctgcaggagatgggccgcgaaccgacg
ccggaagagttggccgagcgtatgctgatgccggaagataaaatccgcaaggtgctgaaa
atcgctaaagagccgatctccatggagacgccgattggtgatgatgaagattcgcatctt
ggcgattttatcgaagacaccacgctggagctgccgctggattccgccacctctgagagc
ctgcgttccgccacgcatgacgtgctggctggcctgacggcccgtgaagcgaaggtgctg
cgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtaggcaaacag
tttgacgttacccgcgagcgtattcgtcagatcgaggcgaaggcgctgcgtaagctgcgt
catccaagccgttcagaagtgctgcgcagcttcctggacgactaa
DBGET
integrated database retrieval system
