Mixta calida: C2E16_19360
Help
Entry
C2E16_19360 CDS
T05419
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcd
Mixta calida
Pathway
pcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2E16_19360 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcd03021
]
C2E16_19360 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcd03400
]
C2E16_19360 (rpoC)
Enzymes [BR:
pcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2E16_19360 (rpoC)
Transcription machinery [BR:
pcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2E16_19360 (rpoC)
DNA repair and recombination proteins [BR:
pcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2E16_19360 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AUY26840
UniProt:
A0ABM6S5K4
LinkDB
All DBs
Position
complement(4074493..4078716)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYEKNEQGEFIPKTSLIDTTIGRAILWMIVPQGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVSRNTLLDEHWCDVLEQNSVDSVKVRSVVACETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGATMAKGDGEQVNAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDTAERTAGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATISSAGSSEFLEGEQVEYSRVKIANRDLEINGKVGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEPTV
APQVSAEEATASLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aagattgcgctggcctcgccagacatgatccgttcctggtctttcggtgaagtgaaaaag
ccggaaaccattaactaccgtaccttcaagccagagcgcgatggtctgttctgcgcccgt
attttcgggccggtaaaagattacgaatgcctgtgcggcaaatacaagcgcctgaaacac
cgtggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcttccccgaccgcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgcgtgctgtat
ttcgaatcttatgtcgtggttgaaggcggcatgaccaacctcgagaagcgccagatcctg
actgaagagcagtatctcgacgcgctggaagagtttggcgacgaattcgacgcgaaaatg
ggcgcggaagcgatccaggcgctgctgaaaaacatggatctggagcaggaatgcgagcag
ctgcgcgaagagctgaacgaaaccaactccgagaccaagcgtaagaagctgaccaagcgc
atcaagctgctggaagccttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgcctgtgctgccgccggatctgcgtcctctggttccgctggacggcggtcgtttt
gcgacttctgacctgaacgatctctatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgactgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagacgccctgctggacaacggtcgtcgcggtcgcgcgatcaccggctccaac
aagcgtccgctgaaatcgctggctgacatgattaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgcgtcgactactctggtcgttccgttattaccgtaggtccttac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcgctcgaactgttcaaaccgttc
atctacggcaagctggagctgcgtggcctcgcgaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagccgtggtttgggatatcctggacgaagtgatccgcgaacacccg
gttctgctgaaccgtgcgccgacgctgcaccgtcttggcatccaggcgtttgagccggtt
ctgatcgaaggtaaagcaattcagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggtgagccgattatc
gttccgtctcaggacgttgttctgggtctgtactacatgacccgcgacaaagtgaacgcg
aaaggcgaaggcatggtgctgaccggcccgaaagaagctgagcgtgtttaccgcgccggc
ctggccgagctgcatgcgcgcgttaaagtgcgtatcactgaatatgaaaagaatgagcag
ggtgaattcatcccgaaaaccagcctgatcgataccactatcggtcgcgctattctgtgg
atgatcgtgccgcagggtctgccttactccatcgtcaaccaggcgctgggtaaaaaggcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgactgttatcttt
gctgaccagaccatgtacaccggttttgcctacgcagcccgttcaggcgcttccgtaggt
atcgacgacatggttatcccggcgaagaaagtggagatcatcaccgaagcggaagcggaa
gtggctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggccgcggccaacgaacgtgttgccaaggcgatgatggaaaac
ctctctaccgaaacggttatcaaccgcgacggcgaagaggaaaaacaggtttcctttaac
agcatctttatgatggccgactccggtgcgcgtggttctgccgctcagatccgtcagctg
gcgggtatgcgtggcctgatggcgaagccggatggctccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatttggtggtgaccgaagatgactgcggcaccctcgaaggcatt
accatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgtgagcgtgtactg
ggccgtgtaacggcggaagacgtactgaagccgggtacggcggacattctggtttcccgc
aacaccctgctcgatgagcactggtgtgacgtgttggagcagaactctgtcgacagcgtg
aaagtgcgttccgttgttgcctgtgaaactgacttcggcgtctgtgcgcactgctacggt
cgtgacctggcgcgtggccatatcatcaacaaaggtgaggccatcggcgttatcgcggcg
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcattcaggtgaagaacaaaggtaccatcaagctg
acgaacgccaagtcggtaaccaactccgctggcaagctggtgatcacttcccgtaacgtt
gaactgaaaatgatcgacgaattcgggcgcaccaaagaaagctataaagtgccttacggc
gcgaccatggcgaaaggtgacggtgagcaggtcaatgctggtgaaacagtagcgaactgg
gatccgcacaccatgccggttatcaccgaagtgagcggtttcatccgtttcaccgacatg
atcgacggccagaccattacccgtcaaactgacgagctgaccggtctgtcttcactcgtg
gtgctggacaccgcagagcgtaccgctggtggtaaagacctgcgtccggcgctgaaaatc
gttgacgctaacggcgacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggcaaagcgattgttcagctggaagacggcgtgaagatcagctctggtgacacc
ctggcgcgtgtgcctcaggaatctggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagcctgcgattctggctgaaattagc
ggtatcgtctccttcggtaaagagaccaaaggcaagcgtcgtctggtgatcacgccggtc
gacggcagcgagccgtacgaagagatgattccgaaatggcgtcagctcaacgtatttgaa
ggcgaacgcgttgaacgtggtgacgtgatctccgacggaccagaatctccgcatgacatt
ctgcgtctgcgtggcgttcaggctgtgacccgttacatcgttaacgaagtgcaggacgta
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgtgcgtcagatg
ctgcgtaaagcaaccatctccagcgcgggcagctccgagttcctggaaggcgagcaggta
gaatactcacgcgtgaagattgccaaccgcgatctggagatcaacggcaaagtgggcgcc
acatacgctcgcgacctgttgggcatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgcggcatcgttccaggagaccacccgtgtcctgaccgaagcagcggtagcaggcaag
cgcgacgagctgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttacgcttaccatcaggatcgtatgcgtcgccgtgcggctggcgagccgaccgtt
gcgcctcaggtgagcgcggaagaagcgacggccagcctggccgagctcctgaacgctggc
cttggtggcagcgacgacgagtaa
DBGET
integrated database retrieval system
