Pediococcus claussenii: PECL_227
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Entry
PECL_227 CDS
T01713
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pce
Pediococcus claussenii
Pathway
pce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PECL_227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pce03019
]
PECL_227
03009 Ribosome biogenesis [BR:
pce03009
]
PECL_227
Enzymes [BR:
pce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PECL_227
Messenger RNA biogenesis [BR:
pce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PECL_227
Ribosome biogenesis [BR:
pce03009
]
Prokaryotic type
rRNA helicases
PECL_227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
Helicase_RecD
Cystatin
Motif
Other DBs
NCBI-ProteinID:
AEV94550
UniProt:
G8PAB1
LinkDB
All DBs
Position
225935..227491
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AA seq
518 aa
AA seq
DB search
MKFTELGLDDDVLKAVIDNGYEEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL
QHVDLNNPNIQAIIVSPTRELAAQTQAEIFKLGKYKKAKVQVVYGGADIRRQINSLKSHP
QIVVGTPGRLLDHIGRKTIRLDHVNTLVLDEADDMLDMGFLPDIEQIIEKTPNDRQTLLF
SATMPQAIKKIGVKFMHDPKQVTVKSKELTADLVDQYYVRSKEFEKFDILTRVLDVQAPK
LAVIFGRTKRRVDEVSKGLVARGYNAAGIHGDLTQQRRMSILHQFRNGDLDILVATDVAA
RGLDITGVTHVYNYDITQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDIERLTKK
RLLPLKPPTEQDAFAGRAAAAEDNIKDLVKHTDVTKYSEQADHLLEEYDAKTLAAALLKK
ETKADSSEVNVKISSERPLPRKKGNGGSHSGNGGGGHRGGNGSRGGRGKWNGNRRDREQR
GNGGGRRDWKDSKKRNNNSNGKSSNRGGSNRKFIIKEK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaccgaattaggtttagacgatgacgtcttaaaagcagttatcgataatggt
tacgaggaaccaacaccaatccaagcagaaacgatcccggatgttttagctggaaaggat
attattggacaagcacaaactggtacaggaaaaacggctgcgtttggtttgccaatatta
caacatgttgatcttaataatcctaatattcaagcgattattgtatcgccaacgcgtgaa
ttagctgcgcaaacacaagctgaaatttttaaattaggtaagtataaaaaagctaaagta
caagtggtttatggtggtgcagatattcgtcgccaaatcaatagtttaaagagtcatcca
cagattgtagttggtacaccaggtcgtttgcttgatcatatcggacgtaagacaattcgt
ttggatcatgtgaatacactggttttggacgaagctgatgatatgttagatatgggattc
ttacccgacattgaacaaattattgaaaaaacaccaaatgatcgtcaaacattgctgttt
tctgcaacaatgccacaagcgatcaaaaagattggtgtcaagtttatgcatgaccctaaa
caagttactgtaaaatcaaaagaattgacagctgacttagttgatcagtattatgttcgt
tcgaaggaatttgaaaaatttgatattttaacacgtgttcttgatgtacaggcgcctaag
ttagcagttatttttggacgtactaaaaggcgtgttgatgaggtttctaagggcttagtt
gctcgcggctataatgcagcgggcattcatggcgatttgactcagcaacgtcgtatgagt
attttacatcaatttagaaatggtgatcttgatatcttggttgctactgatgttgcggct
cgtggattggatattactggtgtaactcatgtttataactatgatattacacaggatcca
gagagttatgttcatcgaattggtcgtaccggacgtgccggcgcccatggtacatctgtt
acctttgttactaactgggaaatggactatctccgtgatattgaacgtctaacgaagaaa
cgtttgctaccattgaagccacctactgaacaagacgcctttgcgggtcgtgcagcagca
gctgaagataacataaaagatctcgttaaacatactgatgttaccaaatattccgaacaa
gcagatcatttgttagaagaatatgatgctaaaacattggctgcagcgctcttgaagaaa
gagactaaggctgattcaagtgaagttaacgttaagatttcatcagaacgaccacttccc
cgtaagaagggtaatgggggatctcatagcggtaacggtggcggtggtcatcgtggcggc
aacggttcccgtggtggacgtggcaagtggaatggtaatcgtcgtgaccgtgaacaacgc
ggtaatggcggcggacgacgtgactggaaagactccaagaaacgtaataacaatagtaat
gggaagtcttctaaccgcggtggttctaaccgtaaattcatcatcaaagaaaaataa
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