Pediococcus claussenii: PECL_266
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Entry
PECL_266 CDS
T01713
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pce
Pediococcus claussenii
Pathway
pce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PECL_266 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pce03400
]
PECL_266 (mfd)
Enzymes [BR:
pce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PECL_266 (mfd)
DNA repair and recombination proteins [BR:
pce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PECL_266 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SNF2-rel_dom
DUF3232
AAA_22
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEV94589
UniProt:
G8PAN0
LinkDB
All DBs
Position
267140..270661
Genome browser
AA seq
1173 aa
AA seq
DB search
MNIQEIFASDNGVLNVLEQADDGKRQLVTGLLEPAKLLLFQTLLGQVNKPILIVMDSLAS
AERLGDELQRLIDPENVHIFPVEEIIAAEVATSSPEYRGMRVAALNALSQRKPGIYITSV
SGVRRHLPLVADFKNATLSFEVGTELDFDDLPIRLSSMGYARTEMVEKPGDFAVRGSIID
VYPLSQENPVRVDFFDTEVDSIREFDVTNQRSLENIESVELLPATDLVVSDDELQSAAER
LQGKLEQRSKTLGSEERNKLQNNLAEVIERWKQGKIVSEDIMFEGYLLQKPASLLDYLDN
GVLVIDDYTRVLDSEKDLETNELSWVTDQLAEYRIVGNDSYGFNIRDMVKLRKQSQIFLS
MFQKGMGRIKFDSLTDITIRPVQEFFGQMPVLKGEVERWLHQKSTVVIYANSKQRQESIG
NTLKDFEIASVSTRPDKIKSNAVNIVGEPFEQGFEFPNAGVVVLTERELFAKVPKKRPRR
QTIENTERLKNYNELKPGDFVVHVNHGIGKFIGMTTMEVDGVHQDYITIHYKGSGQLFIP
VTQLNMVQKYVAAEGKSPKLNKLGGSDWAKTKRSVASKIEDIADELVELYAKRESEKGFA
FNPDDDYQRQFENDFPYSETPDQLRSIEEIKRDMESSRPMDRLLVGDVGYGKTEVALRAA
FKAVESGKQVAILVPTTILAQQHFDTMSDRFSGYPIAIGMLSRFQTTKQVKETIEGLKDG
SIDVVVGTHRLLSKDVGFKDLGLLVIDEEQRFGVKHKERIKELRSQVDVLTLTATPIPRT
LNMSMMGVRDLSVIETPPTNRYPIQTYVLEENSGTLRDGINRELRRGGQVYYLHNRVHDI
EKVVAEIQALVPEANVGYIHGQMTEKQLEDILFEFIQGEFDVLVTTTIIETGIDIPNANT
LFVENADHMGLSQLYQIRGRIGRSSRVAYAYFTYQQNKVLTELGEKRLEAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDMYTQMLSDAIKTKQGKKVTVKTDAEIALG
LDAFLPSDYIEDQQQKIEFYKRLRQVENEDQIMEIQDDLIDRFGEYSVEVENLIHVTELK
LKADEAQIEKIEKRDNFLFISLKTAKRPDLTGENIFEALSVTKLRATVAEENGKMQIKLV
IQPKMTEKQWMVQLSEFVSELSQERVEDSSEQS
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaatattcaagaaatttttgctagtgataacggcgttttaaatgttttagagcaggca
gatgacggaaagcgccagttggtaacaggtctgttggagccggccaaactattactattt
caaacattattgggacaggtcaacaagcccatacttatcgttatggatagtttggcaagc
gcagaacggcttggcgacgagttacagcgcctgattgaccccgagaatgtacacatattt
ccggttgaagaaataattgcggcagaggtagctacaagctctccagaatatagggggatg
agagtagctgctttaaacgcgctttctcaaaggaaaccaggtatttatattacatccgtt
tctggggttaggcgtcatttaccacttgtagctgattttaaaaatgcaacattaagcttt
gaagttggaacggaattggattttgatgatctaccaattagattgtcttcaatggggtat
gcaagaacagaaatggttgaaaaacccggtgattttgctgttcgaggctcaattatcgat
gtatacccgttaagccaagagaatcctgttcgtgttgatttttttgatactgaagttgat
tccattcgtgagtttgatgtgactaatcagcgtagtcttgaaaatattgaaagtgttgaa
cttttaccagctacagatttagttgtgtcggatgatgaactgcagagtgctgcagaacgt
ttacagggtaagttagaacaacggagtaagacacttggttctgaagaacgaaataagctc
caaaataacttggcagaagttattgaacgctggaaacaaggcaagatagtttctgaggac
atcatgttcgagggatacttactacaaaagccagcatcactgcttgattatttggataat
ggtgtactagttattgatgattatacaagggtattggactctgaaaaagatcttgaaaca
aatgagcttagttgggtaacagatcaattagctgaatatcgaatagttggtaatgatagt
tatgggttcaacattcgtgacatggtaaaattgcgcaaacagtctcaaattttcctttca
atgtttcaaaagggaatgggaagaattaaattcgatagtttaacagatataacaattcga
ccagttcaagaattttttggacaaatgcctgtgttgaagggtgaggtggaacgttggtta
catcaaaaaagcacagtggttatttatgctaactccaaacaacgacaggaaagtattggt
aatacactaaaggatttcgagattgccagtgtttcaaccagaccagataagataaaaagt
aatgccgtcaatattgttggagaaccatttgaacagggatttgaatttccaaatgccggt
gttgtagttttaaccgaacgtgagttgtttgcaaaggttcctaaaaagaggccccgtagg
cagacaattgaaaataccgagcgtcttaagaattacaatgaattaaagcccggtgatttt
gtggttcatgttaatcatggaattggaaaatttattggaatgacgacgatggaagtcgat
ggagtccatcaggattatattacgattcattataagggaagcggacaactttttataccg
gttacccagctaaacatggttcaaaagtatgttgctgccgaagggaaaagtcctaaatta
aataaattaggtggtagtgattgggcaaaaactaagcgtagtgttgcttccaaaattgag
gatattgcggatgaactagttgagttatatgcaaaaagagaatcagaaaaaggttttgct
tttaacccagatgacgactatcagcgtcagtttgaaaatgatttcccttattctgagaca
ccagaccaattacgttcaattgaggaaattaagcgggacatggaaagtagcaggccaatg
gatcgtttattagttggtgacgtagggtatggtaaaacagaagtagctttgcgtgctgcg
tttaaagcagttgagagtggaaaacaggttgcaattcttgtgccaacaactatattggca
caacaacattttgatactatgtcggatcgttttagcggatacccaattgcaattggaatg
ttatcacgctttcagacaactaagcaggttaaggaaactattgaaggcttgaaggatggt
tcgattgacgtggttgttggaacgcaccgtttgctgtcaaaagatgttggatttaaagat
ttgggcttgttagtaattgatgaagaacagcgatttggagttaaacataaggaacgtatt
aaagagttgcggtcacaggttgatgttttaacgttgacagcgacaccgattccccgaact
ttgaatatgtcaatgatgggtgtgcgtgatttgtcagttattgagacgccaccaacaaat
cgttatccaatccaaacatatgtattagaagaaaatagtgggacattgcgagatggaatt
aaccgcgaattgcgacgaggcggacaagtttactatttgcacaatcgtgttcatgatatt
gaaaaagtggttgctgaaattcaagcattagttccggaagcaaatgtgggctacattcac
ggacaaatgactgaaaaacagcttgaagatattttgtttgagtttattcaaggtgagttt
gatgtattagtaacaacaactatcatcgaaacaggaattgatattccaaatgctaacact
ttgtttgttgaaaatgctgatcatatggggttatcacagctctaccaaattagaggccgt
attggtcgcagttcacgggtggcgtatgcttacttcacatatcaacaaaacaaggtattg
actgaactaggtgaaaaaagattagaggccataaaagattttactgaacttggatctggt
tttaaaattgcaatgcgggatctttcaatccgtggagcaggcaatctattaggtaaacaa
cagcatggattcattgattctgttggatatgatatgtatacacagatgctatcagatgcc
attaaaactaagcaaggtaaaaaagtaacagtcaaaacggatgcagaaattgcgttggga
ttggatgcatttttaccaagtgattatattgaagatcagcagcaaaagattgaattctat
aagcgtttgagacaggttgaaaatgaagatcagataatggagatacaagatgatttaata
gatcgctttggtgagtattcggttgaagttgaaaacttaattcatgttactgaacttaaa
ttgaaggcggatgaagctcaaattgaaaaaattgagaaacgtgataactttctgtttatt
agtttaaaaacagctaaacggcctgatttaactggtgaaaatatttttgaggcactttca
gttactaaacttcgagcaacagttgctgaggaaaatggtaaaatgcagattaaattggtt
atccaaccaaagatgaccgaaaaacagtggatggtgcaactaagtgaatttgtttcagag
ttgagccaggaacgtgtggaggattcaagtgaacaatcctag
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