Pediococcus claussenii: PECL_722
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Entry
PECL_722 CDS
T01713
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pce
Pediococcus claussenii
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pce03019
]
PECL_722
03009 Ribosome biogenesis [BR:
pce03009
]
PECL_722
Enzymes [BR:
pce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PECL_722
Messenger RNA biogenesis [BR:
pce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PECL_722
Ribosome biogenesis [BR:
pce03009
]
Prokaryotic type
rRNA helicases
PECL_722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEV95013
UniProt:
G8PCM8
LinkDB
All DBs
Position
739807..741171
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AA seq
454 aa
AA seq
DB search
MTDFKDFNLRPFLLDAVKEAGFKTPTPVQKKIIPLIAAGKSVVGQSQTGSGKTHAFLLPI
FNQIDLSQNAIQAVITTPSRELAYQIYEAAKQLASKSETPIEIGNYVGGTDKQRQIDKLG
HHQPQIIIGTPGRVLDLLKAGAIKLRQVKYMVVDEADMTLDMGFLNEVDQIASSMPEDLQ
MLVFSATIPQSVNEFLRRYMENPAIEEIPTETTISPTIDNYLISTKGRDKNQLVYNLLTM
GEPYLALVFTNTKERADELTDYLKQQGLKVAKIHGGIQPRERKRIMKSIHRLDYQYVVAT
DLAARGIDIEGVSLVINDDIPTESEFFVHRVGRTGRNGMSGTAITLYKPSEEPKIQEVER
MGVKFEPKNLVKGELVDTYDRNRRNKRTKDKKQLDPTLLGMVKKKKKKIKPGYKRRIRKA
ISEKEVRDRRVEQHQDFRAAKRAKMKQMRAKRNR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgacagattttaaagattttaacttgcgtccctttttattggatgctgtaaaagaggcg
gggtttaagacgccaactcccgttcagaaaaaaataatacccttgattgctgctggaaaa
agtgttgttggtcaatctcaaactggtagtggaaaaacacatgcttttttgcttccaatt
tttaatcaaattgacctatcacaaaatgctattcaagcggttattacaacgccgagtcgt
gaactagcttatcagatttatgaagctgcaaaacagttagcgagcaaatcagaaactccc
attgaaattggaaattatgtgggtggaactgataagcaacgccaaattgacaaattggga
catcatcaaccacaaattattatcggtactccaggacgagtgctcgatctactaaaagca
ggtgcaataaagctacgtcaggtcaagtatatggttgttgatgaagctgatatgacttta
gatatgggattcttaaacgaggttgatcaaattgcatctagcatgccagaagatttacaa
atgcttgtattctcagctacaattcctcaatcggtaaatgagtttttaagaagatacatg
gaaaatccggcgattgaagaaattccaactgaaacaacaattagtccaaccattgataat
tatttgatttctactaagggtagggataagaatcagctggtttataatttactaacaatg
ggtgaaccgtatcttgcgcttgtattcactaatactaaagagcgtgctgatgaacttact
gattacttgaagcaacaaggcttaaaggtagcaaaaattcacggcggaattcagccacgt
gaaagaaaacgaattatgaagtcgattcatcgattggattatcaatatgttgttgcaacc
gatctcgccgcaaggggcattgatattgaaggtgtttcgcttgtaattaacgatgatatt
ccaacagaatcggagttttttgtacaccgtgttggaagaactgggcgaaatggcatgagt
ggtacggcaatcacgttgtataagcctagtgaagaaccaaagattcaagaagtagaacga
atgggtgttaagtttgagcctaaaaatcttgtaaagggcgagttagttgatacctatgac
cgtaatcgaagaaataagcgtactaaagataagaagcaattagatccaactttgctcggc
atggttaagaagaagaaaaagaagatcaagcctggatataagcgtcgcattagaaaagca
atttcagaaaaagaagttcgtgatcgtcgtgttgaacaacatcaagattttagagcagct
aagcgcgccaaaatgaaacagatgagagctaagcgtaataggtaa
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