Pediococcus claussenii: PECL_865
Help
Entry
PECL_865 CDS
T01713
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pce
Pediococcus claussenii
Pathway
pce03410
Base excision repair
pce03430
Mismatch repair
pce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PECL_865 (recJ)
03430 Mismatch repair
PECL_865 (recJ)
03440 Homologous recombination
PECL_865 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pce03400
]
PECL_865 (recJ)
DNA repair and recombination proteins [BR:
pce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PECL_865 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PECL_865 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PECL_865 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
DUF7809
DUF4254
Motif
Other DBs
NCBI-ProteinID:
AEV95138
UniProt:
G8PD03
LinkDB
All DBs
Position
865871..868189
Genome browser
AA seq
772 aa
AA seq
DB search
MQDNKYSWNKVKEKMPTDLLKKVIDETDLNEITARILYNRGLHDVEAFKSFLKDDPELIH
DPYLMHDMDKAVNRIQTAVEKGEQILVYGDYDADGVTSTSIMYEALDQVGANVEYFVPDR
FKDGYGPNLEEYRSFISYGVQLIITVDNGVAGEEAINYAQENDVDVIVTDHHELPEKLPN
AYAIVHPRYPGSEYPFGGLSGVGVAFKVATALLEEIPEDYLDLYAIGTVADLVSMTDENR
MLVKLGIQQLKVTQRPGLSALIKVAGIKLEGLDEQDIGFGIAPRLNALGRLSNANEAVEL
LTTLDEERATQLAEDIDKINQKRQGIVQEIYADAKVLALTEENQNKQTLVIAGHDWHKGV
LGIVASRIVELTNKPTIVLSDENGDGIYKGSGRSIESFNLFKALNTKRADYESFGGHHMA
VGISVKADKLEILDTTLEDAAIDEQLDYHVKPILKIDETLGNDEVSEQLINQIKQLGPFG
TDNPIPVFEFERVILENIKEIGKNGGHLKFKFSQDGQKKSIDGIAFGRGELAESLPYISN
DINIVGKLSLNEWQGNVSVQVLIDDLNVSGLQVIDRRTSNLNPDMFKESAEYIFFNEKLL
KLLQNKIPNRTMNLYNDVTNLSKDATMVLVDCPTEVAQLKEVISNNQPEKIVTYFFRQVD
YFAEGMPSRENFKQVFGLLNSGDIAKDSVSKISNSLRIEQNNVRFIINVFFELDFVKIEN
GLLSINRSASQHSLEEAPLYKQREQMIQTQGDLLYSSSADLTKLINNFLISE
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagataataaatattcttggaataaagttaaagaaaaaatgccaactgatttatta
aaaaaggttattgatgaaacagatttaaatgaaattacagcaagaattctttataaccgg
gggttacatgatgtagaggcttttaagtcctttttaaaagatgatccagaattgatccat
gatccatacctaatgcatgacatggataaagcggtcaatagaattcaaactgccgttgag
aagggtgaacaaattctggtgtatggtgactatgatgcagatggtgtgaccagtacatca
attatgtatgaggctttggatcaggttggtgctaatgttgaatactttgtcccagaccgt
tttaaagatgggtatggacctaatcttgaggaatataggtcctttatttcgtatggagtt
cagttaattattacagttgataatggtgtcgcgggcgaagaggctattaattacgcacag
gaaaatgatgttgatgttatagttactgatcatcatgaacttccagaaaaacttccgaac
gcttatgcgattgttcatccacgttaccccggaagtgaatatccatttggggggctatca
ggtgttggtgtggcatttaaagttgcaacggctctcttagaagagattccagaagattat
ctggatttgtatgctatcggaaccgtcgcagatttggtttcaatgactgatgaaaatcga
atgttagtaaaacttggtatccaacagctcaaagtgacccaacgtccaggcttaagcgcc
ttgatcaaggtggccggtatcaaacttgaaggattagatgagcaagatattggatttggt
attgctccccgtttaaacgctcttggaagattaagtaatgcgaatgaggcagtagaatta
ctaactacgcttgatgaagagcgcgcaacacagttagccgaggatattgataaaattaac
caaaaacgtcaaggaattgtgcaagaaatttacgcagatgctaaggtattagcattgaca
gaggaaaatcaaaataagcaaacattggtaatagctggtcatgattggcataaaggtgtt
ctgggaatagttgcaagtagaattgttgaactaacgaataaaccaacgattgttttgagt
gacgaaaatggagatggaatctataaaggatccgggcgtagtattgaaagctttaattta
tttaaggcacttaatacgaaaagagcagattatgagtcatttggtggtcaccatatggcc
gtagggatttccgttaaggcagataagctagaaatattagatactacccttgaggatgcg
gcgatagatgaacaacttgattatcacgtgaagccaattttgaaaatagacgaaacttta
ggtaatgatgaagtaagtgaacaattaattaaccaaataaagcaacttgggccattcggg
acggataatcctataccagtttttgagtttgaaagagttattcttgaaaacattaaggaa
attggaaaaaatggtggacatttgaagtttaagttctcacaagacgggcagaaaaaaagt
attgacggcatagcatttggaagaggagaacttgccgaatcacttccttatatatctaat
gatattaatatagtgggaaagttgagtctaaatgaatggcagggaaatgtttctgttcaa
gtcctgatcgatgatttaaacgtgtctgggctgcaagttatcgatagaagaacttctaat
ttaaatccagacatgtttaaggaatctgcagaatacattttctttaatgaaaaactactg
aagttgcttcaaaataaaattccgaatagaacaatgaatttgtacaatgacgtaactaat
ctttcaaaagatgcaacaatggtattagtcgattgtcccacagaagtggcacagttaaaa
gaagttataagtaataatcaaccggagaagatagtcacctacttttttagacaagtggat
tactttgcagaaggaatgccaagcagggagaattttaaacaggtttttggactgttaaat
tctggtgatatcgctaaagatagtgtttcaaagataagtaatagtttaagaattgaacaa
aataacgttcgatttattattaatgtgttttttgaactggattttgttaaaatagaaaac
ggacttctttccattaacaggagtgcttcacaacattcattggaagaagctccactgtat
aaacaaagagaacaaatgatccaaactcagggggatttattatatagctcaagtgcggat
ctaacaaagttaattaataattttttgattagcgagtaa
DBGET
integrated database retrieval system
