Pediococcus claussenii: PECL_903
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Entry
PECL_903 CDS
T01713
Name
(GenBank) ATP-dependent DNA helicase, RecQ family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pce
Pediococcus claussenii
Pathway
pce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PECL_903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pce03019
]
PECL_903
03400 DNA repair and recombination proteins [BR:
pce03400
]
PECL_903
Enzymes [BR:
pce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PECL_903
Messenger RNA biogenesis [BR:
pce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PECL_903
DNA repair and recombination proteins [BR:
pce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PECL_903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_22
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEV95172
UniProt:
G8PD37
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All DBs
Position
902475..903893
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AA seq
472 aa
AA seq
DB search
MTKKELEKFLQKKFNFNHFREGQFDVINSLLNKRNTLAILPTGAGKTLIYQFYGELLKVP
VLIVSPLLSLIGDQVARIRLSGESRVADLSSRQTYQVQQETLNHLSNYRFLFISPEQAAK
PEVQEKLRSVRWGLLVIDEAHCIPKWGPSFRPDYLRLGELRKKLKNPLTLMLTATASEET
RSLIIQYLNLSFVDVNTIIRSVNRPNIYMNFDNLSTNDNKNKELLRLLRELPRGGIIYFS
SRKIANQVSELIDENTDFSSSAYHAGMDTYQRFKIQNQFINDNIDVICATSAFGMGIDKD
NIHFVIHYHMPGNIESFVQEIGRAGRNGEQAISILLYQTGDENIPQNLSSFSIPGQEVIE
SYFEGKNSNELLRYYSEQGLKKEDVLKVFEQQQEQQRREIRKMLEFIHTNGCHREYLLHA
FDESGYQHNQIKLCCSNEVNVSAIRFIERHEKKQLSSVLSWKRALLKLFNSR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaaaaagaacttgaaaaatttttacaaaaaaaatttaattttaatcattttaga
gagggacaatttgatgtaattaactcacttctaaataagagaaatactctggcaatttta
ccgactggcgccgggaaaaccttaatttatcaattttatggcgaattactaaaggtacca
gtgcttattgtttctccattactttctttaattggcgatcaagttgctcgaatacgactt
agtggtgagtcacgtgttgctgatttatcatctcgacaaacttatcaggtgcaacaggaa
acgctaaatcatctttctaactaccgttttttatttatttcacctgaacaggcggcaaag
ccagaagtccaagaaaaattacgctcggttcgatgggggttgcttgtaattgatgaagca
cattgcattccaaaatggggaccgtcgtttagaccggattatttacgccttggtgaacta
aggaaaaagctaaaaaatccgctaaccctcatgctaacagccactgcaagtgaagagact
cgtagtttgattattcaatatttaaatttatcatttgtagatgtgaacactattattcgg
tcggtaaatcgtccgaatatttatatgaattttgataatttgtcaacgaatgacaacaaa
aataaagaactattacgtctcctacgtgaattacccagaggaggaataatttatttttct
agtcggaagatagccaatcaagtttccgaattaattgatgagaacacagatttttcttct
tctgcgtatcatgctgggatggatacttatcaacggttcaaaatacaaaaccagtttata
aatgataatattgacgtaatttgtgctaccagtgcttttggtatggggattgataaggat
aatattcattttgtaattcattaccatatgcccggcaacattgaaagctttgtgcaagaa
attgggagagcaggtcgaaatggagagcaggctatttccatattgttgtatcaaactggc
gacgagaatataccgcaaaatttgtctagtttctcaattcctggacaggaagttatcgaa
agctattttgaaggtaaaaattcaaatgagctactaagatactattctgagcaaggatta
aaaaaagaggacgtgcttaaagtgtttgaacagcaacaagagcagcaacgacgagaaatt
cgcaaaatgttagagtttattcatacaaatggttgtcatcgggagtatttattgcatgca
tttgatgaatctggttatcaacataatcaaattaaattatgctgttcaaatgaagtaaac
gttagtgcaatccgctttattgaaagacatgaaaagaagcaattgtcatctgttttatca
tggaaacgcgcattattaaaattatttaacagtcgttaa
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