Pediococcus claussenii: PECL_925
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Entry
PECL_925 CDS
T01713
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pce
Pediococcus claussenii
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pce03032
]
PECL_925 (topA)
03400 DNA repair and recombination proteins [BR:
pce03400
]
PECL_925 (topA)
Enzymes [BR:
pce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PECL_925 (topA)
DNA replication proteins [BR:
pce03032
]
Prokaryotic type
DNA Topoisomerases
PECL_925 (topA)
DNA repair and recombination proteins [BR:
pce03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PECL_925 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Auto_anti-p27
Toprim_4
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AEV95194
UniProt:
G8PD59
LinkDB
All DBs
Position
923166..925238
Genome browser
AA seq
690 aa
AA seq
DB search
MPTAKKNLVIVESPSKAKTIEKYLGRSYKVIASLGHIRDLPKSKMGVDIDNNYDPHYISI
RGKGDTIKKLRTEAKKAKKVYLASDPDREGEAIAWHLSYLLGLDPKDKNRVVFNEITKDA
VKNAFKTPRSIDTSLVDAQQARRILDRLVGYSISPLLWQKVKKGLSAGRVQSIALSLIIK
REQEIRDFKPEEYWSIDSEFKKGRSKFNASFYGTGGKKKALKNEKAVQKILKLINPKDDF
DVTSVKRKERKRFPSPAFTTSSLQQEANKTLNFRTRKTMMAAQQLYEGINIGKEGTVGLI
TYMRTDSTRISDIAKHEASVLIHEKYGAEYAAIKPRKGKMPEGAQDAHEAIRPSSVNRTP
EDLKEYLSKDQYRLYNLIWSRFMASQMTPEVSDTMAVTIEQNDVQYRANGSKTKFEGFTK
VYKTNKEKDNSLPAMEEGDKVKLVSNNPNQHFTQPPARYSEANLVKALEENGVGRPSTYA
PTLDTIQKRYYVKLESRRFEPTELGEIVNDIIYEFFPDIVNIDFTAHLETELDEIEEGKE
DWVKVVDGYYKPFSKEVDTAQEQIEKVQIKDELAGFDCEVCGSPMVVKMGKYGKFFACSR
FPDCRNTQAIVKEIGVTCPKCGIGQIIERKSKRGRLFYGCSRYPDCDFVSWDKPVGRKCP
VCHSFLVEKKIKGGKQVVCPNGDYEETPQK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgccaactgcaaaaaaaaacttggtgattgttgaatcaccatccaaagcaaaaacaatt
gaaaaatatttaggacgatcgtacaaggttattgccagtttgggacatattagagacctg
cctaagagcaaaatgggtgtggacattgacaataattatgacccacattatatttcgatt
cgtggcaaaggggatacgattaaaaaactccgtacggaagctaaaaaagcaaaaaaggtt
tatttagcttctgatcctgatcgtgaaggagaagcaattgcgtggcatctttcatatttg
ttaggattagacccgaaagataaaaaccgagtcgtattcaacgaaatcacaaaagatgcg
gttaaaaacgcttttaagaccccccgttcaatcgacacatccctagtggatgcgcaacaa
gcgcgtcgcattttagatcgcttagttggatattcaatttcacctttactttggcaaaaa
gttaaaaaaggattaagcgcaggaagagtgcaatcaattgcgctgagcttaattattaaa
cgggaacaagaaattcgcgactttaagcctgaagagtattggtcaattgattctgaattc
aaaaaaggacgctcgaagtttaatgcttcattttatggaacgggcggcaagaaaaaggct
ttgaagaatgaaaaggccgtccaaaagattttaaagcttattaatccaaaggacgatttc
gatgttacttccgtcaagaggaaagaacgaaaaaggtttccgtcgccagcatttacaaca
agttcgttgcagcaggaagccaataaaacgcttaactttagaactcgtaaaacgatgatg
gctgcacaacaattatacgaaggtatcaacattggaaaagaaggaacagtcggattaatt
acttatatgcgaaccgattcaacacgtatttcggacatcgcaaaacatgaagcatcagtt
ttaattcatgaaaaatatggtgctgaatatgctgctattaaacctcgaaagggtaaaatg
cctgaaggtgcgcaagatgcacatgaagcgattcgaccttcttcggtaaatcgaacgcca
gaagatctcaaggaatatctatctaaggaccaatatcggttgtacaacttgatttggtcc
cgatttatggcaagtcaaatgactcctgaggtttctgatacaatggcagttacgattgaa
caaaacgatgttcaatacagggctaatggctccaaaacaaaatttgaagggtttaccaaa
gtttataaaaccaacaaagagaaggataattcacttccagcaatggaagagggcgataaa
gttaagttggtttctaataatcctaatcaacattttactcagccacctgctcgttatagt
gaagctaatttagttaaggcacttgaagaaaatggggtggggcgtccttcaacatatgcg
cctaccttggacacgatccaaaaacgctactatgtaaaacttgaatctagacgttttgaa
cctacggagttgggagagatcgtgaatgatattatttatgaatttttcccagacattgta
aatattgattttacagcacatctagaaaccgaattagatgagatcgaagaaggtaaagaa
gactgggtgaaagtagtcgatggctactataaacccttctcaaaggaagttgatacggct
caagaacagattgaaaaggttcaaattaaggatgagcttgccggatttgactgtgaagtt
tgtggatcaccaatggtcgttaagatgggtaaatatggtaagttctttgcttgtagtcga
ttcccagattgtcgtaacacgcaagcaatcgttaaagagattggtgtgacatgtcctaaa
tgcggaattggacaaattatcgaaagaaaatctaagcgcggtcgtctattttacggttgt
tcacgttatccagattgtgattttgtttcgtgggataaaccagttggacgtaaatgccca
gtttgtcattcattcttagttgaaaagaaaattaagggcggaaaacaagttgtttgtcca
aacggcgattatgaggagactcctcagaagtaa
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