Polaribacter cellanae: J3359_01300
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Entry
J3359_01300 CDS
T08224
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3359_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcea03019
]
J3359_01300
03009 Ribosome biogenesis [BR:
pcea03009
]
J3359_01300
Enzymes [BR:
pcea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3359_01300
Messenger RNA biogenesis [BR:
pcea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3359_01300
Ribosome biogenesis [BR:
pcea03009
]
Prokaryotic type
rRNA helicases
J3359_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
YbjQ_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
QTE22939
UniProt:
A0A975CP65
LinkDB
All DBs
Position
complement(268099..269913)
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AA seq
604 aa
AA seq
DB search
MSTFLELGLKEPIKKALTDLGYEKPTVIQEKAIPQIITSTTDLKAFAQTGTGKTAAFSLP
ILELLDESNSNVQAIILSPTRELAVQIGKNIEDFCKYLKNVKVTTVYGGANMDQQIRSLK
RGSQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKDELDKVLEATPETKQT
LLFSATFPKEVESIARSYMTKPVEITSGEKNKGSDNVSHEYYSVTERTRYPALKRIADLN
PDIYAIIFCRTRRETQEVADNLIKDGYSADSLHGDLSQGQRDSVMGKFRKKTIQILVATD
VAARGLDVTELTHVLNHKLPDQIENYTHRSGRTGRAGNKGISIVLVNGKEKGKLRQIERI
IKKKFVETKVPTGKEIVKNQLMNLIDKVHETEVNESEINEFLPSIYEKLESLNREELIQK
FVSLEFNTMLKYYENAKDLNDLSSKDNSRARATNENMTRFFINIGRKDSLNPAKLIGLIN
DQNIGDKIEIGAIDILDTFSFFEIDKNFEDKTLEAFSSNQPDFDGRSVNVEITKKERSGG
GRRGGKKPFGKKDGGFGRRRSSDGPSSRRSSDNGGGRRRSSDRPDRSSGGDRKSGGFGRR
RRER
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttttagaattaggcttaaaagagcctatcaagaaagcattaacagattta
ggttacgaaaaaccaactgttattcaagagaaagcaattcctcaaattattacatctaca
accgatttaaaagcatttgcacaaacaggtacaggtaaaactgccgcttttagtttgcca
atattagagcttttagacgaaagcaacagcaatgtacaagcgattattttatctccaaca
agagaattagccgttcaaattggtaaaaatatcgaagacttttgcaaatacttaaaaaac
gtaaaagttaccactgtttatggtggtgcgaatatggaccaacaaattagatctttaaaa
agagggtcgcaaattgtagtgggtactccaggtagaaccgtagatttaatcaatagaaga
gctttaaaattaggaaatgttcgatggttggtcttagacgaagcagacgaaatgttaaat
atggggtttaaagatgaacttgataaagttttagaagcaactccagaaaccaaacaaacg
ctattgttttctgcaactttcccaaaagaagtagaatctattgcaagaagttatatgact
aagccagtagaaattacttctggtgaaaaaaataaaggctcagacaatgtaagtcacgaa
tattattcggttacagaaagaactcgttacccagctttaaagagaattgcggatttaaat
ccagatatttatgcaattattttttgtagaactcgtagagaaacacaagaagttgcagac
aatttaataaaagatggctacagtgcagattctttacatggagatttatctcaaggacaa
agagattctgtaatggggaaatttcgaaagaaaaccatacaaatattagttgcgacagat
gttgctgctcgtggattggatgttaccgaattaacacacgttttaaaccacaaattacca
gatcaaatagaaaactacacccatagaagtggtagaactggtagagctggtaacaaaggt
atttctattgttttggtaaatggaaaagaaaaagggaagttacgccaaatcgaaagaatt
attaaaaagaaatttgtagaaacgaaagttcctacagggaaagagattgttaaaaatcaa
ttaatgaacttaattgataaagttcacgaaaccgaagtaaacgaatctgaaattaacgaa
ttcttgccaagcatttacgagaaattagaaagcttaaatagagaagaattaattcagaag
tttgtttctttagagtttaacaccatgttaaagtattacgaaaatgctaaagatttaaac
gatttatcttctaaagataattctagagcaagagcaacaaacgagaatatgactcgtttc
tttataaatattggtagaaaagatagtttgaatcctgcaaaattaattggtttaattaac
gaccaaaatattggtgacaaaatagaaatcggagccattgatattttagacactttttct
ttctttgaaatcgataaaaattttgaggacaaaactttagaagctttttcatcaaatcaa
cccgattttgatggacgttctgtaaacgtagaaattacgaaaaaagaacgttctggtggt
ggaagaagaggtggcaaaaaacctttcggtaaaaaagatggcggttttggaagacgtaga
agttcagacggcccttcttctagaagaagtagtgataatggtggtggaagaagaagatct
tcagacaggccagacagaagttctggtggagatagaaaatctggtggttttggaagaaga
cgtagggaaagatag
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