Polaribacter cellanae: J3359_01815
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Entry
J3359_01815 CDS
T08224
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3359_01815 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcea03019
]
J3359_01815 (rny)
Messenger RNA biogenesis [BR:
pcea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J3359_01815 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
DUF5308
Motif
Other DBs
NCBI-ProteinID:
QTE23034
UniProt:
A0A975CQK9
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Position
408595..410160
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AA seq
521 aa
AA seq
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MDGMLLPIIVGIIGIAIGFIVAKSIEKSKGKKLLNATRKEANSILKEAKVDAESIKKEKI
LQAKEKFIELKSEHEKVILSREKKISDVEKRIRDRESQVASEVDKNKKLNRSLEQKVKDY
DFKLDFLEKKEEDLSKMHKRHIDMLEQISGLSADEAKKELVSSLKDEAKTEAMAFIQTSI
EEAKLTAEQEARKVVLGTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRAIEAA
TGVEIIVDDTPDAIILSCFDPIRREIARLSLHKLVTDGRIHPARIEEVVGKTEKQITQEI
IEVGKRTVIDLGIHGLHPELVKAVGRMKYRSSYGQNLLQHSREVANLCGIMAAEMGLNSK
VAKRAGLLHDIGKVPNEESELPHALLGMQWAEKYGEKPDVCNAIGAHHDEIEMKSLISPI
VQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFTGVQKAYAIQAGRELRVMVESTKV
NDTKASELSFNISQKIQNDMTYPGQVKVTVIRETRAVNVAR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggacggaatgttacttcccattattgtgggaatcataggaattgcaataggttttatc
gttgcaaaatcaatagagaaatctaaaggcaaaaagttattaaatgcaactagaaaagaa
gcaaactctattcttaaagaagccaaagtagatgcagaatcgataaaaaaagaaaagatt
ttacaggcgaaagaaaaatttattgaacttaaatccgagcacgaaaaggtaatattatca
agagaaaagaaaatttctgatgtagaaaagcgaattagagatagagaatcgcaagtagcc
tctgaagtcgataaaaataaaaaactaaatcgctctttagaacaaaaagtaaaagattac
gattttaaactagactttttagagaaaaaagaagaagatttaagtaaaatgcacaaacga
catatagatatgttggagcaaatttctggattatctgcagatgaagctaaaaaagaattg
gtttcttctttaaaagatgaagccaaaacagaagctatggcttttatacaaacgtctatc
gaagaagcaaaattaacagcagaacaagaagcaagaaaagttgttttaggaaccatacaa
agagtaggagtagagcaagctgtagaaaattgtgtttctgtttttaacttagagtcagac
gatgttaaaggaagaattattggtagagaaggtagaaatattagagccattgaagctgca
actggtgtagaaattattgtagatgatactccagatgccattatactttcttgttttgat
ccaattcgtagagaaatagctcgtttatctttacataaattagttacagatggtagaatt
catccagcgagaatcgaagaagttgttggaaaaacagaaaagcaaattacccaagaaatt
atagaagttggtaaaagaacggttatcgatttaggaattcatggtttacatcctgaattg
gtaaaagctgtgggtagaatgaagtacagatcttcttatggacaaaatttactacagcat
tcacgtgaagttgcaaacctatgtggaattatggctgcagaaatgggcttaaactctaaa
gtagcaaaacgtgcaggtttattgcatgatattggtaaagtaccaaatgaagaaagcgaa
ctaccacacgcattactaggaatgcaatgggcagagaaatatggcgaaaagccagacgtt
tgtaatgcaattggagcacaccatgacgaaattgaaatgaagagtttaatctctccaatc
gtgcaagtttgtgatgctatttctggagcaagaccaggagcaagacgtcaagttttagat
tcttacattcaacgtttaaaagatttagaagatattgcatttggttttacaggcgtacaa
aaagcttatgctatacaagcaggtcgtgaattacgagttatggtagaaagcacaaaagta
aacgacaccaaagcatctgaattatcatttaacatttctcagaaaatacaaaatgatatg
acctatcctggacaagtaaaagttacagttattcgagaaacgagggctgtgaatgttgcg
agatag
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