Polaribacter cellanae: J3359_03915
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Entry
J3359_03915 CDS
T08224
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcea
Polaribacter cellanae
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcea03009
]
J3359_03915 (rlmD)
Enzymes [BR:
pcea01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J3359_03915 (rlmD)
Ribosome biogenesis [BR:
pcea03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J3359_03915 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_25
PrmA
Methyltransf_12
Methyltransf_32
Cons_hypoth95
TRM5-TYW2_MTfase
FtsJ
N6_N4_Mtase
Methyltransf_15
Methyltransf_11
UPF0020
Ubie_methyltran
mRNA_G-N7_MeTrfase
Methyltransf_4
DOT1
TRM
Motif
Other DBs
NCBI-ProteinID:
QTE23435
UniProt:
A0A975CRI5
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All DBs
Position
844448..845902
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AA seq
484 aa
AA seq
DB search
MPRRERNKFVKKNQVLELKIEDYAFGGKGIARIHSEEGSFVVFVPNTLPGQLVKAQISKS
SKNYAEAKLIDVLEPSEDEVEVPFQDIPGAPYIQLPIKFQHKYKKESTLSLFKRIGKVEN
IEDLFDEFVTSPNVFHYRNKMEYGFSAIGYDRINKTDKDEFTLGFKRRGVWWMGDNLEKD
SGLFDKQLEDNLKNIRNYCLETGLAPWHGPKKEGFFRYFVVRKSFKTDELLCNLVTTSPD
LDKFDLQKFAEFLRSIFGKRLAGLLHTINDETGDRTIATSGSLKLVYGKDKIVEELLGLN
FEISTKSFFQTNPKCAEKLYNKVVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVAAKSNNA
KIVGVDIVASAIEDAKKNANRNNIEGLKFFAADVGKFLNQHPEYQNKIKTIILDPARAGI
APKTLQKIINLNADRMVYVSCNPATQARDTELLREAGYVMKKISLVDQFPHTSHIETVVL
FEKS
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgccacgtagagaacgcaacaagtttgtaaaaaaaaatcaagttttagagttaaaaatt
gaagattatgcttttggaggaaaaggaattgccagaattcattccgaagaaggaagtttt
gttgtttttgttccgaatacgttgccaggacaattggtaaaagcacaaattagtaaatct
agcaaaaactacgcagaagccaaattaattgatgttttagaaccttcagaagacgaagtg
gaagttccttttcaagacattcctggtgcgccttatattcaattacctattaagtttcaa
cataaatataaaaaagaaagcacactttcattatttaaaagaataggaaaagtagaaaat
atagaagatttattcgacgaatttgtaacctcgccaaacgtgtttcattatagaaataaa
atggaatatggtttttctgcaattggttacgacagaattaacaaaaccgacaaagacgaa
tttacacttggttttaaaagacgtggcgtttggtggatgggcgataatttagaaaaagat
tctggtttatttgacaaacaattggaagacaatttaaaaaacatacgaaactattgttta
gaaacgggtttggctccttggcatggccccaaaaaagaaggttttttcaggtattttgta
gtccgaaaatcttttaaaacagacgaattgttatgtaatctagtaacaacttctcctgat
ttggataaattcgatttacagaaatttgcagaatttttgagaagcatttttggaaaacgt
ttagcaggacttttacacaccattaacgacgaaactggcgatagaaccatagctacctcc
ggaagtttaaaactcgtttatggaaaagataaaattgtagaagaattattaggtttaaat
tttgaaataagcacgaaaagcttttttcaaaccaacccaaaatgtgccgaaaaactatac
aacaaagtagtagaatatgtgttagaagacaaaaccaaagtagataatactgttgtaatg
gatttgttttgtggcacaggaaccattggacaaattgtagctgctaaaagtaataatgca
aaaattgttggtgtagatattgtagcttccgctattgaagatgcaaaaaaaaatgccaac
agaaataatattgaaggtttaaagtttttcgctgcagatgttggtaagtttttaaatcaa
catcctgaatatcaaaataaaataaaaaccattattttagaccctgcaagagcaggaatt
gcaccaaaaacattgcaaaaaattatcaatttaaatgcagacagaatggtgtatgtttcc
tgcaatcctgcaacgcaggcaagagatacagaattgttaagagaagcgggttatgtaatg
aagaaaattagtttggtagatcagtttccgcatacgagtcatattgagactgtggtttta
tttgagaaaagttaa
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