Polaribacter cellanae: J3359_11990
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Entry
J3359_11990 CDS
T08224
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3359_11990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcea03019
]
J3359_11990
Enzymes [BR:
pcea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3359_11990
Messenger RNA biogenesis [BR:
pcea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3359_11990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTE21542
UniProt:
A0A975H5M4
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All DBs
Position
2671081..2672424
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AA seq
447 aa
AA seq
DB search
MTFKDLGLSAALVKAVTEKGYNKPSPIQEKAIPYILEGKDILASAQTGTGKTAGFTLPVL
QYLSETKHPKYRPLRALVLTPTRELAAQVYDNVREYSKYVNIKSAVVFGGVNAKPQIATL
KNGVDILVATPGRLLDLHDRKVVSFKRVDVLILDEADRMLDMGFVRDINKIISFMPAKRQ
NLMFSATFSNDIKKLAATILRNPVSVETAAQNSTAKKVTHKVYKVDKKQKTELAIKLIKD
NNWTQVLVFTRTKHGANKLTEKLIKAGISAAAIHGNKSQGARTKALKNFKDNSIKILVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAAGEAISFVCSEEVEYQKEIEK
ILKEKLNSSILEGFEPTDTAPPKRAATQSKGSFGKKKKQRSSNGNLAKKRDSETSSARKR
KPHFKGNKPAGATSGRGRTGAPKKKRN
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatttaggtttatctgcagcattggtaaaagcagtaaccgaaaaagga
tacaacaaaccatcacctatacaagaaaaagcgattccgtatattttagaaggaaaagat
attttagcttctgcgcaaacaggaactggaaaaacagcaggttttaccttgccagttttg
caatatttatcggaaacaaaacacccaaaatacaggcctttacgtgccttggttttaaca
ccaacaagagaattggcagcgcaagtttatgacaacgtaagagaatacagcaaatatgta
aatattaaatctgccgtagtttttggaggcgtaaatgcaaaaccacaaattgcaacatta
aaaaacggcgtagatattttagtagcaactcctggaaggttgttagatttacatgacaga
aaagtagtttcttttaaacgtgttgatgttttaattttggatgaagcagacagaatgtta
gacatgggttttgttagagatattaacaaaattattagttttatgcctgcaaagcgtcag
aatttaatgttttctgctactttttcgaacgatattaaaaaattagctgctactatttta
agaaacccggtttctgtagagactgctgcacaaaattcaacggccaaaaaagtaacgcac
aaagtttataaagttgataaaaaacaaaaaacggaattagcaattaagctaataaaagat
aataattggacacaggttttggtttttacaagaacaaaacatggtgcgaataaattaacc
gaaaaattgattaaagctggcatttctgcagccgcgattcatggaaataagagtcaaggt
gcaagaacaaaggcgttaaagaattttaaagataattctataaaaattttagtggctaca
gatattgctgctcgtggtttagatattccgttattgcctcacgtaattaatttcgaattg
ccaaacgtacctgaagattatgtgcatagaattggtagaacaggtagagctggtgctgct
ggagaagctatttcttttgtgtgcagtgaggaggtagaataccaaaaagagattgaaaaa
atattaaaagagaaattaaattcttctattttagagggttttgaacctacagatactgcg
cctccaaaaagagcggcaacacaaagcaaaggttcttttggaaagaagaaaaaacaaaga
tcttctaatggaaatcttgctaaaaaaagagattctgaaacaagttctgcacgaaaaaga
aaaccacattttaaaggaaataaacctgctggtgcaacttctggacgtggtagaactggt
gcacctaaaaaaaagcggaattaa
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