Polaribacter cellanae: J3359_15340
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Entry
J3359_15340 CDS
T08224
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3359_15340 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcea03019
]
J3359_15340 (recQ)
03400 DNA repair and recombination proteins [BR:
pcea03400
]
J3359_15340 (recQ)
Enzymes [BR:
pcea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3359_15340 (recQ)
Messenger RNA biogenesis [BR:
pcea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3359_15340 (recQ)
DNA repair and recombination proteins [BR:
pcea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J3359_15340 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Sigma70_r4_2
GerE
HTH_11
TnsD
Fumerase_C
HTH_24
IF2_N
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QTE22167
UniProt:
A0A975CQR3
LinkDB
All DBs
Position
complement(3431708..3433819)
Genome browser
AA seq
703 aa
AA seq
DB search
MKNQTHTLLKNIFGYDNFRPLQEEIINRTIEGKDSFILMPTGGGKSMCFQIPALLFDGIT
VVVSPLISLMKDQVQALKANGIKADFFNSSISVQEENEVITKAINGDLQLLYLSPEKLIS
VSNTWLKQLNIKLVAIDEAHCVSMWGHDFRPEYTQLKVFRNSLPNVPFMALTATADKSAR
KDIEEQLGLQNSKLFISSFDRKNLSIEVRGQVQKRKKLQEIVSFINRRKNESGIIYCLSR
KNTEEVANHLKEIGHSVAFYHAGMSNEEREKTQTDFINDDTKIIVATIAFGMGIDKSNVR
FVIHYNLPKNLEGYYQEIGRAGRDGLPSETLLYYNMRDFVLYSQFAEDGANSAMQKEKLN
RMLQFAEAKSCRRKILLSYFGEHLTENCGNCDVCANPPKDFDGTIITQKALSGIARMGEK
DGITMLINVLRGSNNADVHEKQYFNLKTYGVGKDISFFNWRDYIIQMANQGFIEIMYAES
SALKITPIGWKVLKGEKTVRLTTPISIDDKKKIKKTAKTVIEGETNKDLFTELKKLRYTI
SKEEKMPAYIVFSDKTLKLMASELPTTENEFLAISGVGTNKMEKYGDEFMSVIRKFKNVA
KPRKTPTTLKTFNLYKEGLTPKEIAEERDVSITTIFSHLSQLYSEGKKVDLEQFISKETI
DKVRIAFNEFGRKIELKPIYEKLNEEVSYSEIRISITLILKNE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaatcaaactcatactcttttaaaaaatattttcggttacgataactttcgtcct
ttgcaggaagaaattatcaacagaactatagaaggaaaagacagtttcattctaatgcct
actgggggtggaaaatcgatgtgttttcagattcctgcattacttttcgatggaattaca
gtggtggtttcccctttgatttctttaatgaaagaccaagtacaagcattaaaagcaaac
ggaataaaagccgattttttcaacagctccatttctgtacaagaagaaaacgaagttatt
acaaaagccataaatggcgacttgcaactcttgtatttatcgcccgaaaaattaatatct
gtgagtaatacttggctaaaacaactaaatataaaattggttgctattgatgaagcgcat
tgtgtaagtatgtggggtcatgattttagaccagaatatacacaattaaaagtatttaga
aattcacttccaaatgtgccttttatggcattaactgccactgccgataaatctgccaga
aaagatatcgaagaacaattaggtttgcaaaattccaaattatttatttcttcctttgat
agaaagaacctaagtatcgaagttcgtgggcaagttcaaaaaagaaaaaaattacaagaa
attgtaagctttataaatcgaagaaaaaacgaaagtggaattatttattgtttaagtcga
aaaaatactgaagaagttgctaatcatttaaaagaaattggccattctgttgctttttat
cacgcaggaatgagtaatgaagaaagagaaaaaacacaaaccgattttataaatgatgac
accaaaataattgttgccacaattgcttttggaatgggaatcgacaaatcgaatgttcgt
tttgtaattcattataatttaccaaaaaacctcgaaggttattatcaagaaataggaaga
gctggaagagatggtttgccatcagaaactcttttgtattataatatgagagattttgtt
ttgtatagtcagtttgcagaagatggtgcaaattcagcaatgcagaaagaaaagctgaat
agaatgttacaatttgcagaagcaaaatcgtgtagaagaaaaatattattgtcttatttt
ggagaacatcttacagaaaattgtggtaattgcgatgtttgtgcaaatccacccaaagat
tttgatggcactattatcactcaaaaagcactttctggaattgcaagaatgggagaaaaa
gacggaattacaatgttaattaacgtcttaagaggaagtaacaatgcagacgttcatgag
aaacaatatttcaacctaaaaacatacggagtaggaaaagatatttctttttttaattgg
cgagattacatcattcaaatggcaaaccaaggtttcatagaaatcatgtatgcagaaagt
tccgccttaaaaataacacctattggttggaaagttttaaaaggagagaaaacagtccga
ttaacaacaccaataagtatagatgataaaaagaaaattaaaaaaacagcaaaaactgta
attgaaggcgaaacaaataaagacttatttacggaactcaaaaaattaagatatactatt
tctaaagaagaaaaaatgcctgcctacattgtttttagtgataaaaccttaaaattaatg
gcaagcgaacttccaacaaccgaaaacgaatttttagccatttctggagtaggaacgaac
aaaatggaaaagtatggagatgagtttatgagcgttattcgaaaatttaaaaatgttgca
aaacctagaaaaacacctaccacattaaaaacattcaatttatataaagaaggattaact
cccaaagaaattgcagaagaaagagatgtatcgattactactattttctcgcatttatct
caattatattccgaaggaaaaaaagttgatttagaacaatttattagtaaagaaaccata
gacaaagtacgtattgcttttaatgaattcggtcgaaaaatagaattaaaaccgatttac
gaaaaactaaatgaagaagtttcttattccgaaataagaataagtattacgcttatttta
aaaaatgagtaa
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