Polaribacter cellanae: J3359_16470
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Entry
J3359_16470 CDS
T08224
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcea
Polaribacter cellanae
Pathway
pcea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3359_16470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcea03021
]
J3359_16470 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcea03400
]
J3359_16470 (rpoC)
Enzymes [BR:
pcea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J3359_16470 (rpoC)
Transcription machinery [BR:
pcea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3359_16470 (rpoC)
DNA repair and recombination proteins [BR:
pcea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3359_16470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QTE22375
UniProt:
A0A975CNB1
LinkDB
All DBs
Position
3702708..3706982
Genome browser
AA seq
1424 aa
AA seq
DB search
MARKQEKYTVKKFNKISIGLSSPEAILEASRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEPLQKMDFLTEEEYLDIVDELPQENQY
KDDADPDKFIAKMGAECLIDLLARIDLDALSFELRHKANTETSKQRKTEALKRLNVVEAF
RDSQKNRENNPEWMIMKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLSECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQILMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERISTPEV
PIKGEGLTFYSPEEVTIAFNEEKVDLNAGIKVRTYDVDENGEQVRKIIKTTVGRVLFNEK
VPPAAGYINEVLTKKNLRGIIGGILKATDIPTTGEFLDQIKNMGYKFAFQGGLSFSLGDI
IIPDEKQSMIDEANKEVDIIVGNYNMGMLTQKERYNQVIDVWGSTNNRLTELSMKNLRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLEVAPLKKND
EIVESLADRIEGRISLNNVYHPLTDELLLEANQPITSQLAEAVDKSGIDSVEVRSPLSCE
SSKGICAKCYGQSLSTRNKVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEDNK
LVAKFDGNVTIEDLRTVVGKDSDGNEVDIVISRTAEIKIVDKKTGITQSTNILPYGSIIF
DKDRKTIKKGDAIVQWDPFNGVIVSEFGGKVKFDNLEQGINYSVEIDEQTGFQEKVMIDS
KNKKIIASLIIEDKDGNALRSYSLPVGAHLMVSDGDKVEQGHTLVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPSVVSEIDGVVSFGKIKRGNREIIVESKTEDVRKYLVKLSNQILV
QENDFIKAGMPLSDGATTPSDILRIKGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTLFLENQLIHKNDFIEENDAIYGMKVIESAGDSENLKEGQIISARQL
RDENSLLRRNDKNLVEARDAKPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGKKIPAGTGMRAYDKIIVGPKDEIEQSF
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagagaagtacactgtaaaaaagtttaataaaatctcgattggttta
tcatctccagaagcaattttagaagcttcaagaggagaggtgttaaaaccagaaactata
aattatcgaacacacaaaccagaaagagatggtttattttgtgagcgtatttttggtcct
gtaaaggattacgaatgtgcttgtggaaaatacaaaagaattcgttataaaggaatcgtt
tgtgatagatgtggggtcgaagtaacagaaaagaaagtacgtagagatagagtagggcac
attaatttagtggttcctgttgctcatatttggtactttagatcattacctaacaaaatg
ggataccttttaggtttgccatctaaaaagttagatatgataatttactacgaacgttac
gtagtaattcaaccaggtattgcaaaaggacctgaaggtgaaccgttacaaaaaatggac
ttcttaacagaagaagaatacttggatattgttgatgagttaccacaagaaaatcaatat
aaagatgatgcagacccagataagtttatcgctaaaatgggtgcagaatgtttaattgat
ttattagcacgtatcgatttagatgctttgtcttttgaattaaggcacaaagcaaataca
gaaacatctaaacaacgtaaaacagaagcactaaaacgtttaaatgttgttgaagcattc
agagattctcaaaaaaatagagaaaacaatcctgagtggatgattatgaaggcagtacca
gtaattccaccagaattacgtccattagtacctttagatggtggccgtttcgcaacatca
gatttaaatgatttatatagaagagtaattattagaaacaatcgtttaaaaagattggtt
gagataaaagctcctgaagttattttacgtaacgaaaagcgtatgttacaagaatctgta
gattcattatttgacaacacacgtaaatcatcagcagtaaaaacagaatctaacagacct
ttaaaatctttatcagattcattaaaaggtaaacaaggacgtttccgtcagaatttatta
ggaaaacgtgtagattattcagcacgttctgtaattgttgttgggccagaattaaaacta
tcagaatgtggtatcccaaaagatatggcagctgaattgtacaagccttttgtaattaga
aaactaattgaaagaggaattgtaaaaacagtaaaatctgctaagaaaataatagataga
aaagaaccagttgtttgggatattttagaaaatgtaattaaaggacatccagttttatta
aacagagctcctaccttacacagattgggtatacaagcatttcaaccaaaattaattgaa
ggaaaagcaattcaactacacccattagtttgtactgcctttaatgccgattttgatgga
gatcaaatggcggttcacttaccattaggaccagaagctatattagaagcacaaatatta
atgttggcttcacataatatcttaaaccctgccaatggtgcaccagtaactgtaccttct
caggatatggtacttggtttatactatatgacaaaagaaagaatttctactccagaagta
ccaattaaaggagaaggattaactttctattcaccagaagaagtaacgattgcttttaac
gaagaaaaagttgacttaaatgctggtattaaagtaagaacttacgatgttgatgagaat
ggagaacaagttagaaaaattataaaaactactgttggtagagttttatttaacgaaaaa
gttcctcctgctgctggttacattaatgaagtattaactaagaaaaacttacgtggaatt
attggtggaattttaaaagctacagatattcctacaacaggagaattcttagatcaaata
aaaaatatgggatataaattcgccttccaaggtggtttatctttctctttaggggatatt
attattcctgatgaaaaacaatctatgattgatgaagccaacaaagaagtggatatcatc
gtaggaaactataatatgggtatgttaacgcaaaaagagcgttacaatcaggtaattgat
gtttggggatctaccaacaatagattaaccgaattatctatgaagaatttgcgtgaagac
cagcaaggtttcaactcagtgtacatgatgcttgattctggagcaaggggttctaaagaa
caaattcgtcagttaacaggtatgcgtggattaatggcgaaacctaaaaaatctacagca
ggtggtggagaaattattgaaaacccaattctttctaactttaaagaaggtttatcgatt
ttagaatactttatttcaactcacggtgcacgtaaaggattggcagataccgctttaaaa
acggcagatgcaggttacttaacacgtagattggtagatgtttctcaagatgttattatt
aatgaagaagattgtggaactttaagaggattagaagtagctccattgaagaaaaatgat
gagattgtagaatctttagcagacagaatcgaaggaagaatttctttaaacaacgtttat
catccattaacagacgaacttcttttagaagcaaatcagccaattacatctcaattagca
gaggctgttgataagtctggaattgatagtgtagaagtaagatctccattatcatgtgag
tcttccaaaggtatttgtgcaaaatgttacggacagagtttatctactcgtaataaagta
caaattggtgaggcagttggtgtaattgcagcacaatctattggagaaccaggtacacag
ttaacattacgtacattccacgttggtggggttgcaggtaacatttcagaagacaataag
cttgttgcgaagttcgatggaaatgtaactatagaagatttaagaacagtagtaggtaaa
gatagtgatggaaacgaagtagatatcgttatttctagaactgccgaaattaaaattgta
gataagaaaacaggaattacacaaagtacaaatattttaccttatggttctattattttt
gataaagatagaaagaccatcaaaaaaggagatgctattgtacaatgggatccatttaat
ggtgtaattgtttctgaattcggtggaaaagtgaagtttgacaatttagagcaaggaatc
aactactctgtagaaattgatgaacaaacaggtttccaagaaaaagtaatgatcgattct
aagaacaagaaaattatcgcgtctttaattatagaagataaagatggtaacgctttacgt
tcttacagtttaccagtaggtgcacacttaatggtaagtgatggagataaagtagaacaa
ggccatactttagttaaaataccaagaaaatctggtaaagcaggagatattactggaggt
ttaccacgtgtaacagaattattcgaagcacgtaatccttctaacccttctgtagtttca
gagattgatggtgttgtatctttcggaaaaattaaaagaggaaatagagaaattattgtt
gaatctaaaacagaagacgttagaaagtatttagtaaaactatcgaaccagattttagtt
caagaaaatgactttattaaagcaggaatgccattatcagacggagcaacaacgccttca
gatattttaagaattaaaggaccatctgcagtacaagaatacttagtaaacgaaatacaa
gaagtatatcgtctacagggtgtaaaaattaacgacaaacattttgaagttgtagttcgt
caaatgatgcgtaaagttagaattatagattctggagacacattgttcctagaaaatcaa
ttaattcataaaaacgactttatcgaagaaaacgatgcaatttatggaatgaaagttatt
gaaagtgctggggattctgaaaacttaaaagaagggcaaattatttctgcacgtcaacta
agagacgaaaattctttattaagaagaaacgataagaatttagtagaagcaagagatgca
aaaccagcaacagcagagcaagttttacaaggtattacaagagcttccttacaaacaaaa
tcgtttatttctgcagcttctttccaagaaactacaaaagtattaaacgaagctgctgta
agtggtaaagtagatactttagaaggcttgaaagagaatgtaattgttggtaagaaaata
ccagcaggaacaggaatgagagcttacgataaaataatcgtaggacctaaagacgaaata
gaacaaagtttctaa
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