Polaribacter cellanae: J3359_16990
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Entry
J3359_16990 CDS
T08224
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcea
Polaribacter cellanae
Brite
KEGG Orthology (KO) [BR:
pcea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcea03016
]
J3359_16990
Enzymes [BR:
pcea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J3359_16990
Transfer RNA biogenesis [BR:
pcea03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J3359_16990
Prokaryotic type
tRNA splicing ligases
J3359_16990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTE22476
UniProt:
A0A975CM57
LinkDB
All DBs
Position
3859472..3860863
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AA seq
463 aa
AA seq
DB search
MGNKLKGKDLIKLGFPKNNSINIALGQINRYRKREAKERILEEAKEVLLTPEKFQGNAIW
GKVAEGLVKPVEVKMHQLKNTRVPFSIYGKNEIDEQAKFQLYDALKLPITVQGSLMPDAH
YGYGLPIGGVLATDNAVIPYGVGVDIGCRMCLTVYPIPVSFLKGKQHQFENILKDHTKFG
MRETHVKKNDHEIFYRNEFTEIPLIKRLKDKAYKQLGTSGSGNHFVEFGTVAITENNDEF
GLEIGEYIGVLSHSGSRGLGANIAKHYTYLATKQCHLPKNVQHLAWLDLFTHDGQEYWQA
MNLAGDYAKACHDDIHSRIAKLIGSKPVAKIENHHNFAWKETVNGKECIVHRKGATPAKT
NELGIIPGSMTAPGFIVRGLGNAASLQSASHGAGRKHSRRKCKEKFTKSDIMHQLKMNDV
TLIGGGIDEAPMAYKDIKKVMANQQELVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaactaaaaggaaaagacttaatcaaattaggctttccaaagaataatagt
atcaatattgctttagggcaaattaatagatacagaaaaagagaagcaaaagagcgcatt
ttagaagaagccaaagaagttttattaactcctgaaaagtttcaaggaaatgccatttgg
ggaaaagttgcagaaggtttggtaaaaccagtggaagtaaaaatgcatcaattaaaaaat
accagagttccattttctatctatggcaaaaacgaaattgatgagcaagcaaagtttcag
ttgtatgatgctttaaaattaccaataacagtgcaaggatctttaatgccagatgcacat
tatggttatggtttaccaattggcggagttttagccacagataatgcagtaattccttat
ggagtaggtgtagatattggttgcagaatgtgtttgacggtttatccaattccagtttca
tttttgaaagggaaacaacatcaatttgaaaatattttaaaagatcatacaaaattcgga
atgcgagaaacgcacgttaaaaaaaatgatcacgaaatattttatagaaatgagtttaca
gaaattccgttaataaaacgtttaaaagacaaagcgtataaacaattaggaacttcagga
agtggcaatcactttgtagagtttggtacagttgctatcacagaaaacaacgacgaattc
ggattggaaattggcgagtatataggcgttttatcacacagtggttcacgaggtttgggt
gcaaatattgcaaaacattacacgtatttggcaaccaaacaatgccatttacccaaaaat
gtacagcatttggcttggttagatttatttacacatgatggacaagaatattggcaagca
atgaatttagcaggagattatgccaaggcttgtcatgatgatattcactcaagaattgca
aaattaatcggttcaaaacctgtagcaaaaattgagaatcatcacaattttgcttggaag
gaaaccgtaaatggtaaagaatgcattgtacatagaaaaggagcaacaccagcaaaaaca
aacgagttgggtatcattccaggatctatgacagcaccaggttttatagttcgtggtttg
ggaaatgcagcgagtttgcaatctgcttcacatggagcaggtagaaaacattctcgcaga
aagtgtaaagaaaagtttactaaaagtgatatcatgcatcaattaaaaatgaacgatgtt
acactaattggaggtggaattgatgaagcaccaatggcgtataaagacattaaaaaagtg
atggcaaatcagcaagaattggtagaggtgttaggcacatttacaccaaaaattgtaaga
atggatagataa
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