Paenibacillus cellulosilyticus: HUB94_01595
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Entry
HUB94_01595 CDS
T07813
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcel
Paenibacillus cellulosilyticus
Pathway
pcel02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcel00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUB94_01595 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcel03021
]
HUB94_01595 (rpoD)
Transcription machinery [BR:
pcel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUB94_01595 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QKS43196
LinkDB
All DBs
Position
unnamed1:complement(335414..336550)
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AA seq
378 aa
AA seq
DB search
MANDQHTELDTEQKLELVKDQLIDHGKKRSSLTYKEIMEKLAPFDQDPEQIDEFFEQLDD
LGIEVVNENDDDSRMGRDEHDRERDQEHDEFNFDDDLSLPPGIKINDPVRMYLKEIGRVP
LLSADDEVELAKRIEKGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIK
AVEKFDHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL
GREPTPEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADA
AAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA
LRKLRHPSRSKRLKDFLE
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaacatactgaactagatacggagcagaagcttgagttggttaaagac
caactaatcgatcacggtaagaagagatcctccttaacgtacaaagagataatggagaag
cttgccccattcgatcaggatcctgaacaaatcgatgagttcttcgagcagcttgatgac
ttgggaattgaggtcgtcaatgagaatgacgatgactcccggatgggtcgggacgagcat
gatcgggagagagatcaagagcacgacgaattcaatttcgatgatgatctatcattgccg
ccaggcattaagattaatgatccagtgcgcatgtacttgaaagaaattggacgggttccg
ctgttgtcggctgacgatgaggtggaattggctaagaggatcgagaagggcgatgaagaa
gcgaagcgtcgtcttgcagaagcaaacttgcgactcgtcgtaagtattgcgaagcgttat
gtcggacgcggcatgctgttcctcgacttgatccaggaaggcaacatgggtctgatcaag
gctgtcgagaagttcgaccatacgaaagggtacaaatttagtacctacgcaacatggtgg
attcgtcaagccattacgcgtgcgatcgccgatcaggcgcgtacgattcggattccagtc
cacatggtagagaccattaacaagcttatccgggtttcccgtcaattactgcaagagctg
ggacgcgaaccgacgccagaagaaatcgcggcggagatggagcttagcaccgataaagtt
agagagatcatgaagattgcacaagagccagtatcgctggaaacaccgattggtgaggaa
gacgattcgcatcttggtgattttatcgaggatcaggaagcacttgcgccggcggacgca
gccgcttatgagttgctgaaggagcagcttgaagatgtgctggacacgctgacggagcgg
gaggagaacgtacttcgccttcgtttcggactcgacgacgggcgtacgcgcacgctggag
gaagtcggcaaagtgttcggtgttacgcgcgaacggattcgccagattgaggccaaagcg
cttcgcaagctgagacatccaagccgcagcaagcggttgaaagattttcttgaataa
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