Paenibacillus cellulosilyticus: HUB94_06320
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Entry
HUB94_06320 CDS
T07813
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcel
Paenibacillus cellulosilyticus
Brite
KEGG Orthology (KO) [BR:
pcel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcel03009
]
HUB94_06320 (rlmD)
Enzymes [BR:
pcel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HUB94_06320 (rlmD)
Ribosome biogenesis [BR:
pcel03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HUB94_06320 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_25
Cons_hypoth95
MTS
PrmA
Methyltransf_11
Methyltransf_32
FerA
PCMT
N6_N4_Mtase
Methyltransf_12
OST-HTH
Motif
Other DBs
NCBI-ProteinID:
QKS46410
LinkDB
All DBs
Position
834689..836215
Genome browser
AA seq
508 aa
AA seq
DB search
MNAPVAKNEEYIVDIIGLTHDGEGVGRANGFTLFVHGALPGEKARVLVMKVKKQYGYAKL
LELIETSPDRVGAPCEIYKQCGGCQLQHMSYEAQLRWKRQHVVDNLVRIGKLHVEGETAK
PRVKEFDAQAVGDEIVNVSASAEASASSAAQGDGSVHSVVVHPTVGMDEPWRYRNKAQVP
IGMAIADLEDGAAGGLIGGFYAQGSHRIIDMDACLIQHERNDEVVRHIKRIGTELGITAY
EEESGRGLLRHVVVRTGFVTGELMVVLVTNGTHIPNKDQWIASIRTALPEVNSIVQNVNT
LDTNVIFGDETRTLWGSDVIYDELDGIRFAISARSFYQVNPAQTVALYRTAVEYAGLTGQ
ETVIDAYCGIGTISLFLARQAGRVYGVEIVPEAIEDSKRNAELNGIENADFEAGPSEVVI
PRWRQEGITADVIVVDPPRKGCDPALLDTIIRMKPERVVYVSCNPSTLARDLRVLEDGGY
KTVEVTPVDMFPHTVHVECCVSLIRSIE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atcaatgcgccggtggctaagaacgaggaatacatcgtcgatattattggattgacgcat
gatggtgagggcgttggtcgagcgaatgggtttacgctgttcgtgcatggtgcactacca
ggtgaaaaagctcgcgtgctcgtgatgaaagtgaagaagcagtacggctacgccaagctg
ctcgagctcattgagaccagccccgaccgcgtcggtgcgccttgcgaaatctacaagcaa
tgcggcggctgccagctgcagcatatgagctacgaggcacagctgcgctggaagcggcag
catgtcgtcgacaatctcgtgcggatcggcaagctgcatgtggaaggcgagacggcgaag
ccgcgtgtgaaagagtttgatgcgcaggctgttggggacgagattgttaatgtaagtgcg
agtgctgaggctagtgcaagttcggcggctcagggggatggttcggttcactccgttgtc
gttcacccgaccgttggcatggacgagccttggcgctatcggaacaaagcgcaggtgcca
atcggcatggcgattgccgatcttgaagacggcgctgctggcggcctgatcggcggcttc
tatgcgcagggcagccatcgcatcatcgatatggatgcgtgcctaatccagcatgagcgc
aacgatgaagtcgtgcgccatatcaagcgtatcggtacggagcttggtatcacggcctac
gaagaagagagcggccgcggcctgcttcgccatgtcgtcgttcggacaggctttgtcacg
ggcgagttgatggttgtccttgtcacgaacggaacgcatatcccgaacaaggaccaatgg
atcgcgagcatccgcaccgcgctgccggaagtgaacagcatcgtgcagaacgtgaacacg
ctcgacacgaacgtgatcttcggcgacgagacccgtacgttgtggggcagcgacgttatc
tacgatgagctcgacggcattcgcttcgcgatttccgctcgttccttctaccaagtcaac
ccggcacagacggtggcgctctatcggacagcggtggagtacgcggggctgacaggccaa
gagacggtaatcgacgcttattgcggaattggaacgatctcgctgttcctcgctcggcaa
gctggccgcgtctacggtgttgaaattgtgccggaggcgattgaagattcgaagcgaaat
gcggagctgaacggaattgagaatgcggacttcgaggcagggccatctgaagttgttatt
ccgcgttggcgccaggaagggattacggctgacgtgatcgttgtcgatccgccaaggaag
gggtgcgatccagcactgctggatacgattatccgcatgaagccggagcgggttgtgtat
gtgtcgtgtaatccttcgacactggcgagggatctgagagtactcgaggatggtgggtac
aagacggtggaagtgacgccggtggatatgttcccgcatacagttcatgtggagtgctgt
gtgtcgctaataagatctattgaatag
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