Paenibacillus cellulosilyticus: HUB94_11125
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Entry
HUB94_11125 CDS
T07813
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcel
Paenibacillus cellulosilyticus
Pathway
pcel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUB94_11125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcel03019
]
HUB94_11125
03009 Ribosome biogenesis [BR:
pcel03009
]
HUB94_11125
Enzymes [BR:
pcel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUB94_11125
Messenger RNA biogenesis [BR:
pcel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUB94_11125
Ribosome biogenesis [BR:
pcel03009
]
Prokaryotic type
rRNA helicases
HUB94_11125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QKS44903
LinkDB
All DBs
Position
2056290..2057894
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AA seq
534 aa
AA seq
DB search
MSTFAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPL
INKIPTSEDRIVALIMTPTRELAIQVAEEIGKLTRYKGLRTLPIYGGQEIGRQIRALKKH
PQIIIGTPGRLLDHINRKTIKLADVQTVVLDEADEMLDMGFMEDITSILSMVPEERQTML
FSATMPPNIQRLAQQFLSNPEHVSVIPKQVSAPLIDQAYIEVHERQKFEALSRLIDMESP
ELAIIFGRTKRRVDELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREIDHLHFIEKVTR
HKITRKPLPSIAEAIEGKQRVTAERLIENVQNDDTQEYKGIAIHLLEQYDSVNLLAAAIK
LLTGEKKDVNIELTPEDPIRAKKRRPDVRASGRRYTGNSFGGNRSGGSSSNRGEGGGGYR
GGNRSEGGRGGYGGGGRSYGGNRSSSNSEGGKGRSERSGESRRKYSSSDDFVNK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
ttgagtacatttgctgaattcggactggagcctaaagtgcttcaggccattacggagctt
ggattcgaggaagcaaccccgatccagtccaaatcgattccaattgcgttgacgggcagc
gacctgatcggccaagcgcaaacgggcacagggaaaacagctgcattcggtatcccactg
attaacaaaatcccgacaagcgaagatcggattgtcgcactaattatgacgccaactcgt
gagcttgcgatccaagtagctgaagagatcggaaaattgacgcgttacaagggtcttcgc
acgctgccaatctacggcggccaagagatcggacgtcaaatccgtgcacttaagaaacac
ccgcaaatcatcattggtacgccgggccgcttgctcgaccatatcaaccgtaagacgatc
aagcttgctgacgtacaaacggttgtcctggacgaagcagacgaaatgctcgatatgggc
ttcatggaagacattacttccatcctgagcatggtaccagaagaacgccagacgatgctg
ttctcggcaacgatgcctccgaacattcaacgtcttgctcagcaattcctgagcaaccca
gagcatgtatcggttatcccgaaacaagtcagcgctccgctgatcgatcaagcatatatc
gaagtgcatgagcgtcagaagttcgaagcacttagccgtctgatcgatatggaatcgcca
gagcttgccatcatcttcggtcgtacgaagcgccgtgttgatgagctctccgaagcgctc
cagaagcgtggctattcggcagaaggtctccatggcgacctttcacagaaccaacgcgat
aacgtcatgcgcaagttccgcgacggaagcattgacgttctcgtagcaacggacgttgca
gctcgtggtcttgacgtatcgggcgtaacacacgttattaacttcgaccttccacaagac
cctgagagctacgttcaccgtatcggccgtacaggtcgtgctggtaaagagggtacagct
tggtcgttcgtgacaccacgcgagattgatcatctgcactttatcgagaaagttactcgc
cacaaaattacgcgcaagccgctcccaagcatcgcggaagcgatcgagggcaagcaacgc
gtaacggctgagcgtctcatcgagaatgttcagaatgatgatacgcaagaatacaaaggc
atcgcaattcatctgcttgagcagtacgactccgtcaacctgctggcagcagcgattaag
ctgctgacgggcgagaagaaggacgttaacattgaattgacgcctgaagatccgattcgt
gcgaagaagcgtcgtccagacgttcgcgcaagcggtcgtcgttacacgggcaactcgttt
ggcggcaaccgcagcggtggcagctcttctaaccgtggcgaaggcggcggcggataccgt
ggcggcaatcgcagtgaaggtggtcgcggcggttatggcggcggcggacgcagctatggc
ggcaaccgcagcagcagcaatagcgaaggcggcaaaggacgcagcgagcgttccggcgag
tcgcgccgtaagtattcttcttcggatgacttcgtaaacaagtaa
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