Paenibacillus cellulosilyticus: HUB94_18170
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Entry
HUB94_18170 CDS
T07813
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pcel
Paenibacillus cellulosilyticus
Brite
KEGG Orthology (KO) [BR:
pcel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcel03019
]
HUB94_18170 (hrpB)
Enzymes [BR:
pcel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HUB94_18170 (hrpB)
Messenger RNA biogenesis [BR:
pcel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HUB94_18170 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
ResIII
HA2_C
wHTH-PRTase_assc
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QKS46148
LinkDB
All DBs
Position
complement(3629439..3632165)
Genome browser
AA seq
908 aa
AA seq
DB search
MRRLPALPIDEAVPDLLKALAGGPNAVLVAPPGAGKTTRVPLALLDEAWLNGGKIIMLEP
RRLAARSAAAHMASLLGEKTGETVGYRVRLDTKVSAATRIEVVTEGVLTRMLQSDPSLEG
VGAILFDEFHERHLHGDLGLALCLQAQSLLREDLRLLVMSATLEAAPVARLLGDAPIIES
EGRAFPVQTIYSDRQAGFGLGALWQGESIEDRTARAVLRVLPEHEGDVLVFLPGMREMRR
VESQLRQQGIGRGMYGSIDVVLLHGSMPLEEQGQAVAPSPEGRRKIVLATSIAESSITVE
GVRVVIDSGMMRVPRFSPRTGMTRLETVTVSVPSADQRRGRAGRVAPGVCYRLWTEQEQL
MLAPRSTPELLEADLAPLALELAAWGVSAPSELAWLDEPPAGAYASACELLQQLGAFDRE
RRLTPLGRRMAALGAQPRLARMLLSAAAISPAAADTACELAALLSGRDPLRGERSADIAL
RLGALRALRRGGAAPDGASGGVDEAAARQALAEARQWQRALAQDGAGASPSASRAASPHG
GGTSAAPTPRGEAASSPAAPTPRGEAASSPRGHDGSHSARGNNASPTREPSIGALLAFAY
PDRVGQGRGDGRFLLAGGRGAVLTPAQPLSYASYIAGAEMEDGDGESRIVLAADIEENEL
HAYHSDHVVEELSVLWDRSAQAVRARRKLMFGALVLKEEQVTKPDPIKVTAALLDGIRTE
GTAILSWNKQSSQLRDRIRVMRKYDPELPDLSEEALLASLEDWLAPHLTGIRSRDGLQKL
NMMHVLEAMLSWNDKHRLDELMPTHMTVPSGSRIPIDYTNPEQPVLAVKLQELFGLQETP
RIAKGRLPLTLHLLSPAQRPVQVTQDLANFWRNTYFEVKKELKVRYPKHYWPDDPFAAVP
TSRVRPRP
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
gtgagacgattaccggcattgccgattgatgaggcggttccagatctgcttaaggcactg
gcaggtggaccgaacgcagtattggttgcgccgcctggtgcgggtaagacgactcgggtt
ccgctagcgttactggatgaagcatggcttaatggcggcaaaatcattatgcttgagccg
cgaaggctggctgctcgttcggcagctgcgcatatggcttcgctgctaggtgagaagaca
ggggaaacggtcggatatcgcgtacggctcgatacgaaagtgagcgcagcgacgcggatc
gaagtcgtgaccgaaggcgtgctgacgcgaatgctgcagagcgatccctcgcttgaaggt
gttggagcgattctgtttgatgagtttcacgagcggcatttgcacggcgatctaggattg
gcattgtgcttgcaggcacagtcgctgctgcgcgaggatttgcgcttgctcgttatgtcg
gcaacgcttgaggctgcgccagttgctcgcttgcttggtgatgcgcctattattgagagt
gagggaagggcttttccggttcaaacgatttattcggatcggcaggcaggttttggctta
ggcgcgctatggcagggtgaatcgattgaagatcggacagcacgagctgtgctgagggta
ctgccagagcatgaaggggacgttcttgtcttccttccagggatgcgtgagatgcgacgc
gtggagtcgcagcttcggcagcaaggaattggacgcggcatgtacggatctatcgatgtc
gtactgctacatggcagtatgccgctggaggagcaaggtcaggcggtagcgccaagtccg
gagggacgccgtaaaatcgtactcgcgacgtcaattgccgaatcttcgattacggttgaa
ggcgtccgcgtcgttattgacagcggcatgatgcgggtgccgcggttttcgccgcgtaca
ggaatgacgcggctggagacggtaacggtatcggtaccgtcggccgatcagcgccgcgga
cgcgcagggcgcgttgcgccaggcgtctgctaccggctgtggacggagcaggagcagctg
atgcttgcgccgcgcagcacgccggagctgctcgaagcggatcttgcgccgctggcgctc
gagcttgccgcttggggcgtcagcgcgccaagcgagctggcatggctcgatgagccgccg
gcaggcgcttatgcgagcgcatgcgagctgctgcagcagctcggcgcgtttgaccgcgag
cggcggctaacgccgctcgggcggcgcatggccgcgctcggcgcgcagccaaggctcgcg
cgcatgctgctgtccgcggcggcgatcagccccgccgccgcggacaccgcgtgcgagctg
gccgcgctgctcagcggccgcgatccgctgcgcggcgagcgcagcgccgacatcgcgctg
cggcttggcgcgcttcgcgcgctccggcgcggcggtgccgcgccggatggggcgagcggc
ggcgtagacgaggccgccgctcgccaggcgctcgcggaagcgcgccaatggcagcgcgcg
ctcgcgcaagatggtgccggggcttcgcccagcgccagtagagcggcttcgccgcatggc
ggcggtacatcagcggcgccaacgccacgcggcgaagccgcatcatcgccagcggcgcca
acgccacgcggcgaagccgcatcatcgccgcgcggccacgacggctcgcactcggctcgc
ggcaataacgcctcgcctacgcgcgagccgtcgattggcgcgctgctcgccttcgcctac
cccgatcgcgtcggccaaggccgtggcgacgggcgcttcctgcttgcaggcggccgaggt
gccgtgctgacgccggcgcagccgctgtcttatgcttcgtatatcgctggtgcagagatg
gaagacggcgatggcgagagccgaatcgtgcttgcagcagacattgaagagaatgaactg
catgcgtaccacagcgatcacgtcgtggaagagctgtcggtcttatgggatcgcagcgcg
caggccgtccgtgccagacgcaagctgatgtttggtgcactcgtgttgaaagaggagcag
gttacgaagcctgatccgattaaagttacagcggccttgctagatggtatacgcacagaa
ggaactgcgattttgtcatggaataagcaatcttcgcagcttcgtgatcggattcgcgtt
atgcgtaagtacgatccagaactgccggatttgtcagaggaagcattgttggcatcgttg
gaagattggctggcgccgcatctaacgggcattcgcagccgtgacggcttgcagaagctg
aacatgatgcatgtgctggaagcgatgttgtcctggaatgataagcatcgattggatgaa
ctgatgccaacgcatatgacggtaccgagcggttcgcgtattccgattgattatactaat
ccggagcagcccgtgctggcggtcaagcttcaggagttgttcggcctgcaggaaacgccg
aggattgcgaaagggaggcttccgctgacgcttcatctgctgtcacctgcacagcggcct
gtacaagtgacgcaggatttggcgaacttctggcggaacacctattttgaagtaaaaaaa
gaactgaaggtacgttatccgaagcattattggccggatgatccgttcgcggcggtgcca
acgagtcgggtaagaccgagaccttaa
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