Paenimyroides ceti: ACKVMI_12705
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Entry
ACKVMI_12705 CDS
T11582
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcet Paenimyroides ceti
Pathway
pcet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACKVMI_12705 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcet03021
]
ACKVMI_12705 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcet03400
]
ACKVMI_12705 (rpoB)
Enzymes [BR:
pcet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACKVMI_12705 (rpoB)
Transcription machinery [BR:
pcet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACKVMI_12705 (rpoB)
DNA repair and recombination proteins [BR:
pcet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACKVMI_12705 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
DUF7111
AGA2
Motif
Other DBs
NCBI-ProteinID:
YBV29128
LinkDB
All DBs
Position
2701397..2705209
Genome browser
AA seq
1270 aa
AA seq
DB search
MITNQTERLNFASTKNIPSFPDFLDIQVKSFKDFFQLETKSDERGNEGLYKTFMENFPIT
DTRNQFVLEFLDYFVDPPRYSIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYTGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTVLDKDNIEEIIDANVKSILLHKEDNN
QADYTIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLNLDTPIDKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNSMGFIETPYRKVENGKLNLTEEPVYLSAEEEEGKLIAQANIQINDKGAILEEKVIAKQ
DADFPVVEPNELDYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAP
IVGTGLERQVATDSRVLINAEGEGTVEYVDAQKITIKYDRTEEERLISFESDEKTYSLIK
FRKTNQSTSINLKPIVRKGDRVTKGQVLCEGYATQNGELALGRNLQVAFMPWKGYNFEDA
IVISERVVRDDIFTSIHVDDYTLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVLDKKLFA
RAVKDKRKRSKDKEDIAVLDTKFEVKFNDLRERLVEKLFFIVNGKTSQGVMNDLGEEILP
KGKKFTQKMLYAIEDFAHLTKGQWTTDDHTNGLIADLIHNYKIKLNDLQGVLRREKFMIT
VGDELPSGILKLAKVYIAKKRKLRVGDKMAGRHGNKGIVAKIVRDEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGKKLGRKYATPIFDGASLDQINELTDEAGVPRFGHTY
LYDGGTGERFDQKATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGEAMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgattacaaatcagactgaaagattaaattttgcctcgaccaaaaatatcccgtctttt
ccagactttttggatattcaggttaaatcgtttaaagatttctttcaattagaaactaaa
tctgacgaaagaggtaatgaaggtttatataaaacctttatggaaaacttcccaattact
gataccagaaatcagtttgtgttagaattccttgattatttcgtagatccacctcgttat
tctattgaagaatgtattgatagaggtttaacttacagcgtgccgttaaaagcgcgttta
aaactctactgtactgacccggaacacgaagacttcgaaactatcgttcaggatgtatac
ctaggtactataccttatatgacacctagtggaacttttgtaatcaatggagcggagcga
gttgttgtgtcacaattgcatcgttcacctggtgtattcttcggccaatctttccacgca
aatggtacaaagctttattctgcccgtgttattcctttcaaaggatcatggattgagttt
gctactgatatcaatagtgtgatgtatgcttacattgaccgtaaaaagaagttacctgta
actactttattcagagccatcggttttgagcgcgataaagacattttagaaatatttgat
cttgcagaagaagttaaagtttctaaaaccggtcttaaaaaatatactggaagaagactt
gctgcacgtgtattgaatacatggcatgaagacttcgtagatgaagataccggagaagta
gtatcgatagagagaaatgaaattatcttagaccgtgacacagtattggataaagataat
atcgaagaaatcattgatgctaatgtaaaatctattcttttacataaagaagataataat
caggcagattatactatcatccacaatacattacagaaagaccctacaaactctgaaaaa
gaagctgtagagcacatttatcgtcaattacgtaatgccgaaccgccagatgaagaaact
gcgcgtggaattatagataagttattcttctcagaccaacgttacaacttaggtgaggta
ggtcgttacagaatgaataaaaaattaaacttagatactcctattgacaaacaggtttta
acaaaagaagatattatcactattgttaaatatctgattgaattgatcaactcaaaagct
gagattgatgatatcgatcacttatctaaccgtcgtgttagaactgtaggagaacagtta
tcagctcagttcggtgtaggtcttgcccgtatggcacgtactatccgtgagcgaatgaat
gtcagagataatgaagtatttacaccgatcgatctgatcaatgcaaaaacattgtcttct
gtaattaattcattctttggtacgaatcagttgtctcagtttatggatcaaaccaatcca
ttggcagagattacgcataagcgtcgtttatcggctttaggaccaggtggtctttcgcgt
gaaagagcaggttttgaggtgcgtgacgttcactatacgcattatggtcgtctttgtccg
attgaaactcctgagggaccaaatatcggattgatttcctctttatctgtttatgctaaa
gtaaacagtatgggattcattgaaacaccatatcgtaaagtagaaaacggaaaattgaat
ttgactgaagagccggtttacttatctgctgaagaagaagaaggtaaattgattgctcag
gcaaatattcagatcaatgataaaggagccattttagaagaaaaagtaattgcaaaacaa
gatgcggatttcccggttgtagaaccaaatgaattggactatgctgacgttgcaccaaat
cagattgcttctatttctgcttctttgattcctttcctggagcatgatgatgcgaaccgt
gccttgatgggatcaaacatgatgcgtcaggcggtaccattattacgtccggaagcaccg
atcgtaggaacgggattagaacgccaggtggcaactgactcaagagtactgatcaatgct
gaaggagaaggaaccgttgaatatgtagacgctcaaaaaataactattaagtacgatcgt
acagaagaagaacgtttaatcagttttgaatctgacgagaaaacatatagtttaattaag
ttcagaaaaaccaaccagagtacctctattaatctgaaaccaattgtaagaaaaggagac
agagttactaaaggacaagtactttgtgaaggttatgcaacacaaaacggagaattggca
ttaggaagaaacctacaggtagctttcatgccttggaaaggatataactttgaggatgct
atcgtaatttctgaaagagtagtaagagatgatatttttacctctattcacgtagatgat
tataccttggaagttagagataccaaattgggtaatgaagaattaaccaatgatattcct
aacgtatcagaagaggctacaaaagaccttgatgagaacggaatgatcagaatcggagct
gaagtaaaacctggtgacatccttattggaaaaattactccaaaaggagaatcagatcct
actcctgaagaaaaattacttcgtgctatctttggtgataaagccggagatgtaaaagat
gcatcattaaaagcatctccttcattaagaggagttgttttagataaaaaactatttgca
agagccgttaaggacaagcgcaaacgttcaaaagacaaagaagatattgctgtattagac
actaaattcgaagttaaattcaatgacttaagagagcgtttagtagagaaattattcttt
atcgtaaatgggaaaacatctcagggcgtaatgaacgatttaggagaagaaattttacca
aaaggtaaaaaattcactcagaaaatgttgtatgctattgaagatttcgctcatttaaca
aaaggacaatggacaactgatgatcataccaacggattaatcgctgatttgattcacaat
tacaaaatcaaattaaacgatttacagggagtattacgtcgtgagaaatttatgattact
gtaggagatgaacttccatcaggaatcttaaaattggcaaaagtatatattgctaaaaaa
cgtaagctgcgcgttggggataagatggcaggacgtcacggaaataaaggtattgttgcc
aaaattgtacgtgatgaagatatgccgttcttagaagacggtacgccggttgatattgta
ttgaatccacttggggtaccatcccgtatgaatatcggtcagatttatgaaacggtttta
ggttgggctggtaaaaaattaggacgtaaatatgcgacacctatttttgacggagcttct
ttagatcagatcaatgaactgactgatgaagcaggagtgccaagattcggacatacgtat
ttatatgacggaggtaccggagagcgttttgaccaaaaagctacagtgggtgttatttat
atgttgaaattaggacatatggttgatgataaaatgcacgcgcgttcgatcggaccatac
tccctgattacacaacaaccattaggaggtaaagcacaattcggaggtcagcgttttgga
gagatggaggtatgggctcttgaagcttatggtgcatcgagtacattacgtgagatattg
actgtaaaatctgatgatgttattggtagagctaaaacctatgaagcaattgttaagggt
gaagctatgccggaaccgggattacctgagtcattcaatgtattaatgcatgaattaaaa
ggtcttggtttagatatcagattagaagaataa
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