Polistes canadensis: 106786206
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Entry
106786206 CDS
T05611
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcf
Polistes canadensis
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcf03016
]
106786206
Enzymes [BR:
pcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106786206
Transfer RNA biogenesis [BR:
pcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106786206
Prokaryotic type
tRNA splicing ligases
106786206
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
106786206
NCBI-ProteinID:
XP_014602832
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINQWSWRIKKGFQPNMKVEGIFYVNNTLERLMFDELKNACRPGAV
GGFLPGMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDLNDPKSIVSPGGVGFD
INCGVRLLRTNLFQEDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEQKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFNLSPDDLDMHVIYDVSHNVAKIE
EHLVDGKPKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNLDYKDVLNKLESLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHSAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcagacagtatcaggaggaacttaagtacttagaaaaaataaatcaatggtct
tggagaattaaaaaaggtttccaacctaatatgaaggtcgaaggaatattttatgttaac
aatacgttagaacgtttaatgttcgacgaattaaaaaatgcatgcaggccaggtgcagtt
ggaggttttcttccaggtatgaaacagattgctaacgtagctgctttacctggaattgtt
ggaagatcagttgggttacccgatgttcattctggatatggttttgctattggaaatatg
gcagcgtttgatttaaatgatccaaagtcaatagtatcaccaggtggagtaggatttgat
attaattgtggtgtacgtttgttaagaacaaatttgtttcaagaagacgttctacctatt
aaggaacaacttgcgcaaagtatgtttgatcatattccggtaggagtcggatctaaaggg
attataccaatgaatgctaaagatttagaagaggcattggagatgggtatggattggtct
ttgagagaaggctacatttgggcagaggataaagaacattgcgaagaatatggtagaatg
ttaaatgctgatccttcgaaagtgtcaatgagagcaaagaaacgtggtcttcctcagtta
ggtacattaggtgcgggtaatcattatgctgagattcaagtcgtagatgaaatttatgat
aaatgggctgcatgtaagatgggtatagaacaaaagggccaaatctgtgtgatgattcat
tcaggaagcagaggttttggacatcaagttgctacagatgcactcgtgcaaatggagaaa
gctatgaaaagggataatatcgagacaaatgatagacaattagcttgcgctcatattaaa
tctcaggagggccaagattatttaaaagcaatgtcggctgctgctaattttgcatgggtc
aatcgaagttctatgacatttcttactcgacaggcatttgcaaaacaatttaatctttct
ccagatgacttggacatgcatgttatttacgatgtatcgcataacgtagctaaaattgaa
gaacatttggtcgacggcaaaccgaaaacccttttagttcataggaagggatcaaccagg
gcttttccacctcatcatccattaattcctgtagattatcagttaacaggtcagccggtt
ttaatcggcggtactatgggaacatgcagttatgttcttaccggaactgaacaaggaatg
caagaaacatttggatctacgtgccatggagctggtcgtgccttgtctagggccaaatca
cgaagaaatttagattacaaagatgttctaaataaattagaaagtttaggtatatccatt
agagttgcctcaccaaaattagttatggaagaggctcctgaatcttataaaaatgtaacg
gatgttgtgaacacgtgccattctgctggtatctcgaaaaagtgtattaaactgaggcca
atagcagttattaaaggataa
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