Polistes canadensis: 106788657
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Entry
106788657 CDS
T05611
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcf
Polistes canadensis
Pathway
pcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106788657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcf03019
]
106788657
03041 Spliceosome [BR:
pcf03041
]
106788657
Messenger RNA biogenesis [BR:
pcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106788657
Spliceosome [BR:
pcf03041
]
Complex B
Other components
Prp19-related factors
106788657
Complex C
106788657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
ARM_TT21_C
PPR
NRDE-2
Mad3_BUB1_I
DHR-2_Lobe_A
TPR_10
Microp_apicomplexa_6
SNAP
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
106788657
NCBI-ProteinID:
XP_014607597
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MIERKDNEGNLYSFNDEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSNNLNMVYERALTE
LPGSYKLWYNYLRHRLRQLKKRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCILMTKQ
CYITRTRQVFDRSLRALPITQHHRIWPLYIDFLKKHNVYETSVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAIKLAQIVNQDDFVSKHGKSNHQLWNELCNLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKCIENETMIATEDGNIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENNQIADARVIFERATHV
PYTKVDDLASVWCEWAEMEIRHGNSKEALKLMHRATAMPFRKVSYHDENETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDVWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPSKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVSSNFWKVWKEFEVQHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNVSGQVSGVQIDSMRALDNKISETAAQAGLKETIKFV
RGITETDGKESSRVNNPDEIDIDMDDDNENEEEEEEEEEIEEEMSIEKQVIPSQVFGSLK
TADNDATEDE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacgaaaagataacgagggaaatttgtatagttttaatgatgaagatttacct
tatgaagaggaaattttacggaatccttattccgtaaaacattggcaacgttatattgac
catttaaaaaatactaaaagtaataacttaaatatggtttatgaacgtgctttaacagaa
cttcctggaagctacaaattgtggtacaactatcttcgacaccgattaagacagttaaag
aaaagatgtataacggatcccctttacgaagatgtgaataatgcatttgaaagagctttg
gtatttatgcataaaatgccacgtatttggatggattattgtatactaatgacgaaacaa
tgctacattacacgtactcgtcaagtatttgaccgttctcttagagcgcttcctattaca
cagcatcatcgtatttggccactttatatagactttttaaaaaaacataatgtttacgaa
acatctgtcagggtatttagacgatatttgaagttggcaccagaagacactgaagaatat
atagaatacttaatatccattggaagacttgacgaagcggctattaaacttgcacagata
gtcaatcaagatgattttgtatcaaaacatggaaaatctaatcatcagttgtggaacgaa
ttgtgtaatttgatatctaaaaatccttctaaaataaaatctcttaatgtcgacgctatc
attagaggtggtttaaggagatacactgatcaattaggaccactgtggaactcattggct
gattattatgttcgcagtggtctctttgaaagagcaagagatatttatgaagaagcgata
caaacggtaacgactgtcagagactttacgcaagtttttgatgcatatgcacaatttgaa
gaattaagtctcagtaaatgtatcgaaaatgaaacgatgattgcaaccgaagatggtaat
attgaactagagttgcgtttagcaagatttgaacatctcatggaaaggagattgttatta
ctgaattcagtattattaagacaaaatcctcataatgtacaagagtggcataagagagtt
aaactttacgaaggacaaccgcacgagataattaatacatacactgaagcagtacaaacc
gtacaaccacaattagcagtcggcaagttacatactttgtgggttgcatttggcaagttt
tatgaagaaaataatcaaatagcagatgctagagtaatttttgaaagagctactcatgtt
ccttatactaaggtggatgatttagcatcagtgtggtgtgaatgggcagaaatggagatt
agacatggaaattctaaagaggcgttgaagcttatgcatcgtgctaccgccatgccattc
cgtaaagtttcctatcatgatgagaatgaaactgtacaaatgagattgtacaaatcttta
aaagtatggtccatgtatgctgatttagaagaaagttttggtacattcaagacgtgcaag
gctgtatatgataaaataatagatctaaaaatagccacacctcaaattattattaattat
ggtttgttcttagaagaaaataattacttcgaggaagcttttagggcatatgagaaagga
attgcactctttaaatggcctaacgtatatgacgtatggaatacatatctcactaaattt
ttgaaacgatatggtggaacaaaattggaacgtactcgtgatttgtttgaacaatgttta
gaacactgtcctagtaaatatgctaaagcattatatttattgtatgcaaaattagaagaa
gaacatggtttggccagacacgcaatgtctgtctacgaaagagctactagtgcagtttta
cctgaagaaagatttgaaatgtttaacatatacattaagaaggctgcagatatttatggt
gtaccaaaaactagacaaatatatgaaaaagctattgaagttcttaacgatgaaaatact
agagaaatgtgtttaagatttgctgaaatggaaactaaattaggagaagtagatagagcg
agagctatttatgcacattgcagtcaaatatgcgatcctagggtatcatctaatttttgg
aaagtttggaaggaatttgaagtacaacatggaaatgaagatacaatgcgtgaaatgctt
agaatcaaacgtagtgtacaagccatgtataatactcaagttaatatgatgtctgctcaa
atgttgaacaacgtctctggtcaagtatctggtgtacagatcgatagtatgcgtgcccta
gataacaaaatttctgagacggctgctcaagctggattgaaggaaactattaaatttgta
cgcggtataactgaaactgatggaaaagaatcgtcacgtgtaaataatccggatgaaatt
gatatcgatatggatgatgataatgaaaacgaagaagaagaagaagaagaagaagaaatt
gaagaagaaatgtctattgaaaaacaagtcattccatcgcaagtatttggtagcttaaaa
acagcagataacgatgcaactgaagatgaatga
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